Update derived-from text in copyright blurb.

AnastasiaMiles · Jan 3, 2019 · b838597 · b838597
1 parent bfd6a09
commit b838597
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Showing 22 changed files with 27 additions and 1 deletion.
diff --git a/src/bogart/AS_BAT_OptimizePositions.C b/src/bogart/AS_BAT_OptimizePositions.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_BAT/AS_BAT_Unitig.C
  *    src/bogart/AS_BAT_Unitig.C
  *
  *  Modifications by:

diff --git a/src/bogart/AS_BAT_PlaceReadUsingOverlaps.C b/src/bogart/AS_BAT_PlaceReadUsingOverlaps.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_BAT/AS_BAT_PlaceFragUsingOverlaps.C
  *    src/bogart/AS_BAT_PlaceFragUsingOverlaps.C
  *
  *  Modifications by:

diff --git a/src/bogart/AS_BAT_PlaceReadUsingOverlaps.H b/src/bogart/AS_BAT_PlaceReadUsingOverlaps.H
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_BAT/AS_BAT_PlaceFragUsingOverlaps.H
  *    src/bogart/AS_BAT_PlaceFragUsingOverlaps.H
  *
  *  Modifications by:

diff --git a/src/bogart/AS_BAT_Unitig_AddRead.C b/src/bogart/AS_BAT_Unitig_AddRead.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_BAT/AS_BAT_Unitig_AddFrag.C
  *    src/bogart/AS_BAT_Unitig_AddFrag.C
  *
  *  Modifications by:

diff --git a/src/bogart/AS_BAT_Unitig_PlaceReadUsingEdges.C b/src/bogart/AS_BAT_Unitig_PlaceReadUsingEdges.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_BAT/AS_BAT_Unitig_PlaceFragUsingEdges.C
  *    src/bogart/AS_BAT_Unitig_PlaceFragUsingEdges.C
  *
  *  Modifications by:

diff --git a/src/pipelines/canu/HaplotypeReads.pm b/src/pipelines/canu/HaplotypeReads.pm
@@ -15,6 +15,7 @@
  #
  #  This file is derived from:
  #
+ #    src/pipelines/ca3g/CorrectReads.pm
  #    src/pipelines/canu/CorrectReads.pm
  #
  #  Modifications by:

diff --git a/src/stores/loadErates.C b/src/stores/loadErates.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_OVS/overlapStoreBuild.C
  *    src/stores/ovStoreBuild.C
  *
  *  Modifications by:

diff --git a/src/stores/ovStoreFilter.C b/src/stores/ovStoreFilter.C
@@ -15,6 +15,8 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_OVS/AS_OVS_overlapStore.C
+ *    src/AS_OVS/AS_OVS_overlapStore.c
  *    src/stores/ovStore.C
  *
  *  Modifications by:

diff --git a/src/stores/ovStoreWriter.C b/src/stores/ovStoreWriter.C
@@ -15,6 +15,8 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_OVS/AS_OVS_overlapStore.C
+ *    src/AS_OVS/AS_OVS_overlapStore.c
  *    src/stores/ovStore.C
  *
  *  Modifications by:

diff --git a/src/stores/sqLibrary.C b/src/stores/sqLibrary.C
@@ -16,6 +16,7 @@
  *  This file is derived from:
  *
  *    src/stores/gkLibrary.C
+ *    src/stores/gkStore.C
  *
  *  Modifications by:
  *

diff --git a/src/stores/sqLibrary.H b/src/stores/sqLibrary.H
@@ -16,6 +16,7 @@
  *  This file is derived from:
  *
  *    src/stores/gkLibrary.H
+ *    src/stores/gkStore.H
  *
  *  Modifications by:
  *

diff --git a/src/stores/sqRead.H b/src/stores/sqRead.H
@@ -16,6 +16,7 @@
  *  This file is derived from:
  *
  *    src/stores/gkRead.H
+ *    src/stores/gkStore.H
  *
  *  Modifications by:
  *

diff --git a/src/stores/sqStoreConstructor.C b/src/stores/sqStoreConstructor.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/stores/gkStore.C
  *    src/stores/gkStoreConstructor.C
  *
  *  Modifications by:

diff --git a/src/stores/sqStoreCreate.C b/src/stores/sqStoreCreate.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_GKP/gkpStoreCreate.C
  *    src/stores/gatekeeperCreate.C
  *
  *  Modifications by:

diff --git a/src/stores/sqStoreDumpFASTQ.C b/src/stores/sqStoreDumpFASTQ.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_GKP/gkpStoreDumpFASTQ.C
  *    src/stores/gatekeeperDumpFASTQ.C
  *
  *  Modifications by:

diff --git a/src/stores/sqStoreInfo.C b/src/stores/sqStoreInfo.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/stores/gkStore.C
  *    src/stores/gkStoreInfo.C
  *
  *  Modifications by:

diff --git a/src/stores/sqStorePartition.C b/src/stores/sqStorePartition.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/stores/gkStore.C
  *    src/stores/gkStorePartition.C
  *
  *  Modifications by:

diff --git a/src/stores/tgStoreCompress.C b/src/stores/tgStoreCompress.C
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    src/AS_CNS/MultiAlignStore.C
  *    src/stores/tgStore.C
  *
  *  Modifications by:

diff --git a/src/utgcns/unitigConsensus.H b/src/utgcns/unitigConsensus.H
@@ -19,6 +19,7 @@
  *    src/AS_CNS/MultiAlignment_CNS_private.H
  *    src/AS_CNS/MultiAlignment_CNS_private.h
  *    src/utgcns/libcns/MultiAlignment_CNS_private.H
+ *    src/utgcns/libcns/unitigConsensus.H
  *
  *  Modifications by:
  *
@@ -150,7 +151,7 @@ private:
   bool   initializeGenerate(tgTig                     *tig,
                             map<uint32, sqRead *>     *reads = NULL,
                             map<uint32, sqReadData *> *datas = NULL);
-                            
+
 
   bool   generatePBDAG(tgTig                     *tig,
                        char                       aligner,

diff --git a/src/utility/files-compressed.C b/src/utility/files-compressed.C
@@ -15,6 +15,8 @@
  *
  *  This file is derived from:
  *
+ *    src/utility/AS_UTL_fasta.C
+ *    src/utility/AS_UTL_fileIO.C
  *    src/utility/files.C
  *
  *  Modifications by:

diff --git a/src/utility/files-compressed.H b/src/utility/files-compressed.H
@@ -15,6 +15,8 @@
  *
  *  This file is derived from:
  *
+ *    src/utility/AS_UTL_fasta.H
+ *    src/utility/AS_UTL_fileIO.H
  *    src/utility/files.H
  *
  *  Modifications by:

diff --git a/src/utility/speedCounter.H b/src/utility/speedCounter.H
@@ -15,6 +15,7 @@
  *
  *  This file is derived from:
  *
+ *    kmer/libutil/speedCounter.H
  *    src/AS_UTL/speedCounter.H
  *
  *  Modifications by: