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- Model-based segmentation of vertebral bodies from MR images with 3D CNNs
- Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation
- U-net: Convolutional networks for biomedical image segmentation
- 3D U-Net: Learning dense volumetric segmentation from sparse annotation. 
- V-Net: Fully convolutional neural networks for volumetric medical image segmentation.arXiv:1606.04797
- The importance of skip connections in biomedical image segmentation Spatial clockwork recurrent neural network for muscle perimysium segmentation
- NPIS-2015 Parallel multi-dimensional LSTM, with application to fast biomedical volumetric image segmentation
- Multi-dimensional gated recurrent units for the segmentation of biomedical 3D-data
- Combining fully convolutional and recurrent neural networks for 3D biomedical image segmentation
- Recurrent fully convolutional neural networks for multi-slice MRI cardiac segmentation. arXiv:1608.03974
- Automatic detection and classification of colorectal polyps by transferring low-level CNN features from nonmedical domain
- Deep learning for multi-task medical image segmentation in multiple modalities
- Sub-cortical brain structure segmentation using F-CNNs
- Segmentation label propagation using deep convolutional neural networks and dense conditional random field
- Fast fully automatic segmentation of the human placenta from motion corrupted MRI
- Automatic detection of cerebral microbleeds from MR images via 3D convolutional neural networks
- Non-uniform patch sampling with deep convolutional neural networks for white matter hyperintensity segmentation
- A unified framework for automatic wound segmentation and analysis with deep convolutional neural networks
- Deep 3D convolutional encoder networks with shortcuts for multiscale feature integration applied to Multiple Sclerosis lesion segmentation 
- Brain tumor segmentation using convolutional neural networks in MRI images
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tangzhenyu authored Feb 22, 2018
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## Medical Image Semantic Segmentation
### Papers
- Deep neural networks segment neuronal membranes in electron microscopy images
- Semantic Image Segmentation with Deep Learning [[Paper]](http://www.robots.ox.ac.uk/~sadeep/files/crfasrnn_presentation.pdf)</br>
- Automatic Liver and Tumor Segmentation of CT and MRI Volumes Using Cascaded Fully Convolutional Neural Networks [[Paper]](https://arxiv.org/pdf/1702.05970.pdf)</br>
- DeepNAT: Deep Convolutional Neural Network for Segmenting Neuroanatomy [[Paper]](https://arxiv.org/pdf/1702.08192.pdf)</br>
- CNN-based Segmentation of Medical Imaging Data [[Paper]](https://arxiv.org/pdf/1701.03056.pdf)</br>
- Deep Retinal Image Understanding (http://www.vision.ee.ethz.ch/~cvlsegmentation/driu/data/paper/DRIU_MICCAI2016.pdf)</br>
- Deep Retinal Image Understanding (http://www.vision.ee.ethz.ch/~cvlsegmentation/driu/data/paper/DRIU_MICCAI2016.pdf)
- Model-based segmentation of vertebral bodies from MR images with 3D CNNs
- Efficient multi-scale 3D CNN with fully connected CRF for accurate brain lesion segmentation
- U-net: Convolutional networks for biomedical image segmentation
- 3D U-Net: Learning dense volumetric segmentation from sparse annotation.
- V-Net: Fully convolutional neural networks for volumetric medical image segmentation.arXiv:1606.04797
- The importance of skip connections in biomedical image segmentation Spatial clockwork recurrent neural network for muscle perimysium segmentation
- NPIS-2015 Parallel multi-dimensional LSTM, with application to fast biomedical volumetric image segmentation
- Multi-dimensional gated recurrent units for the segmentation of biomedical 3D-data
- Combining fully convolutional and recurrent neural networks for 3D biomedical image segmentation
- Recurrent fully convolutional neural networks for multi-slice MRI cardiac segmentation. arXiv:1608.03974
- Automatic detection and classification of colorectal polyps by transferring low-level CNN features from nonmedical domain
- Deep learning for multi-task medical image segmentation in multiple modalities
- Sub-cortical brain structure segmentation using F-CNNs
- Segmentation label propagation using deep convolutional neural networks and dense conditional random field
- Fast fully automatic segmentation of the human placenta from motion corrupted MRI
- Automatic detection of cerebral microbleeds from MR images via 3D convolutional neural networks
- Non-uniform patch sampling with deep convolutional neural networks for white matter hyperintensity segmentation
- A unified framework for automatic wound segmentation and analysis with deep convolutional neural networks
- Deep 3D convolutional encoder networks with shortcuts for multiscale feature integration applied to Multiple Sclerosis lesion segmentation
- Brain tumor segmentation using convolutional neural networks in MRI images

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