v1.9.17

• added percent of reads stuck at Root to bit-gen-kraken2-tax-plots plots

v1.9.16

• adding --minimum-percent-threshold parameter to bit-gen-kraken2-tax-plots as option instead of default rank-based filtering method

v1.9.15

• adding bit-gen-kraken2-tax-plots

v1.9.14

• adding bit-gen-reads

v1.9.13

• drastically improved efficiency of bit-mutate-seqs

Full Changelog: v1.9.12...v1.9.13

v1.9.12

• fix to bit-rename-fasta-headers for an error introduced with help menu standardizations that prevented it from running 🤦‍♂️ (yes, unit tests are coming eventually!)

v1.9.11

• fix to bit-summarize-assembly for an error introduced with help menu standardizations that prevented it from running 🤦‍♂️ (yes, unit tests are coming eventually!)

v1.9.10

• updates to bit-ez-screen
  • transpose option added for output table
  • handling for if the inputs come from different directories but have the same basename
  • defaults for minimum percent ID and percent coverage set to 80
  • option to filter output table so targets that weren't detected aren't included

v1.9.9

• updated bit-dl-ncbi-assemblies to store ncbi-assembly metadata tables and only re-download if they are older than 4 weeks, rather than re-downloading them everytime the program is used

Full Changelog: v1.9.8...v1.9.9

v1.9.8

• standardization of help menus
• improvements to bit-ez-screen to deal with long targets (>10,000 nt)

Full Changelog: v1.9.7...v1.9.8