A series of tools for single cell assignment or cell annotation
Document to see http://39.102.38.22:8090/page/display?document_id=161
$novoalgor --help
Get into miniconda scanpy_env environment successfully!
Usage: novoalgor.py [OPTIONS] COMMAND [ARGS]...
Tools for cell marker search ,celltype assignment and visualization
Options:
--help Show this message and exit.
Commands:
cellvisual visualization for celltype assignment
fast-celltype run fast-celltype algorithm to celltype assignment
get-top-gene get top n markers from marker file
global-filter filter specific markers from input marker file globally
global-search search and filter specific markers globally
local-search search and filter specific markers by input celltype...
show-precision Compute precision for prediction results and output...