Charlesyip2016
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R package gathering a set of wrappers to apply various integration methods to Seurat objects (and rate such methods)
RIDDEN command-line interface: Data-driven inference of receptor activity for cell-cell communication studies
Seismic R package. Discover cell type-trait associations in minutes for GWAS and single-cell RNA-sequencing data
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics
Analyze single cell-disease association with scDRS and MAGMA.
Aligning gene expression trajectories of single-cell reference and query systems
The AI Scientist: Towards Fully Automated Open-Ended Scientific Discovery 🧑🔬
Differential RhythmicitY analysis in R is an R package that provides the statistical framework to assess differential rhythmicity of a time series with two and more conditions.
Cross-platform data for sequencing-based spatial transcriptomics benchmarking
Single cell RNA-seq analysis bundle
Differential expression genes (DEGs) obtaining methods by R language.
TICPE is a cancer-specific qualitative method based on the relative expression orderings (REOs) of gene pairs within a sample to estimate the proportion of immune cells.
An R package to infer cell-cell interactions and clinical values in tumor immune microenvironment through gene pairs.
Non-parametric density inference for single-cell analysis.
Join subcellular Visium HD bins into cells
Color blindness friendly visualization of single-cell and bulk RNA-sequencing data
AUCell: score single cells with gene regulatory networks
CWGCNA is an R package to perform causal inference from the WGCNA framework.
Open source code for AlphaFold 2.
Feature selection for preserving biological trajectories in single-cell data
A tool for detecting somatic variants in single cell data