ChrisCreevey
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apply_decision_tree Public
Tool to implement a j48 decision tree from WEKA
C GNU General Public License v3.0 UpdatedFeb 22, 2024 -
crann Public
Fast heuristic methods of detecting adaptive evolution in protein-coding genes.
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LIN-barcodes2tree Public
A tool to generate a phylogenetic representation of a LIN barcdoe taxonomy
Perl GNU General Public License v3.0 UpdatedOct 11, 2023 -
catsequences Public
A tool for concatenating multiple fasta alignments for supermatrix phylogenetic analyses
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clan_check Public
Check trees for compatibility with defined groupings in unrooted trees - "The incontestable clan test"
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concatabomination_MRP Public
Forked from agalychnica/concatabominationMRP matrix-specific pipeline for the method described in: Siu-Ting K., Pisani D., Creevey C.J., Wilkinson M. (2015). Concatabominations: Identifying Unstable Taxa in Morphological Phylogenetics usi…
Perl GNU General Public License v3.0 UpdatedAug 29, 2023 -
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clann Public
Clann: constructing consensus trees and supertrees from multiple source trees
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Strip_Parsinform Public
An experimental tool to strip alignments by infomrativeness, conservation, etc..
C UpdatedMay 14, 2020 -
machete Public
Machete: Automated Likelihood decay indices and Maximum likelihood phlyogeny construction with PAUP*
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alltreees Public
A simple piece of code that generates all possible unrooted trees in tree-space, given a certain number of taxa
C GNU General Public License v3.0 UpdatedNov 25, 2018 -
treedist Public
Rapid calculation of pathlength distances between taxa on phlyogenetic trees
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randomblast Public
A tool for identifying gene famililes from very large datasets.
C UpdatedApr 4, 2017 -
RDP_to_JSON Public
tools for parsing RDP taxonomy output in JSON format for visualisation
HTML GNU General Public License v2.0 UpdatedAug 15, 2015