Skip to content
@CoBrALab

Computational Brain Anatomy Laboratory

Computational Brain Anatomy Laboratory, located in the CIC at the Douglas Institute, McGill University

Pinned Loading

  1. MAGeTbrain Public

    Multiple Automatically Generated Templates brain segmentation algorithm

    Python 48 25

  2. atlases Public

    Segmentations of Neuroanatomy on Hi-Res T1 and T2 MRIs and publicly available population averages in MNI space

    Python 33 19

  3. antsRegistration-MAGeT Public

    A reimplementation of MAGeTbrain using only ANTs tools.

    Shell 16 6

  4. minc-bpipe-library Public

    Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines

    Shell 13 8

  5. MINC-VM Public

    Packer built VMs with minc-toolkit and friends

    Shell 7 3

Repositories

Showing 10 of 41 repositories
  • MAGeTBrain-nextflow Public
    Nextflow 0 0 9 1 Updated Mar 21, 2025
  • optimized_antsMultivariateTemplateConstruction Public

    A re-implementation of antsMultivariateTemplateConstruction2.sh using optimized image pyramid scale-space and qbatch support

    Shell 25 8 34 0 Updated Mar 18, 2025
  • minc-toolkit-extras Public

    Extra miscellaneous scripts for minc-toolkit

    Shell 6 7 8 1 Updated Mar 18, 2025
  • RABIES Public

    fMRI preprocessing pipeline and analysis tools adapted for rodent images. Visit the full documentation at https://rabies.readthedocs.io/

    Python 39 16 59 4 Updated Mar 11, 2025
  • ODC-Mouse-Forms Public

    A repo containing OpenDataCapture forms for tracking mouse data gathered from experiments within the CoBra Lab

    TypeScript 1 1 4 0 Updated Mar 6, 2025
  • CobraLab.github.io Public Forked from poole/hyde

    Website

    HTML 0 4,038 6 0 Updated Mar 4, 2025
  • make_slice_images Public
    Shell 1 0 2 0 Updated Feb 27, 2025
  • CPCA Public

    Complementary principal component analysis (CPCA) for fMRI confound correction.

    0 0 0 0 Updated Feb 5, 2025
  • twolevel_ants_dbm Public

    A twolevel deformation based morphometry pipeline using ants

    Python 10 8 19 1 Updated Aug 12, 2024
  • minc-bpipe-library Public

    Library of bpipe implemented commands commonly applied to minc datafiles, suitable for importing into other pipelines

    Shell 13 8 10 1 Updated Jun 21, 2024
View all repositories