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@DIAGNijmegen

Diagnostic Image Analysis Group

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  1. neural-odes-segmentation neural-odes-segmentation Public

    Neural Ordinary Differential Equations for Semantic Segmentation of Individual Colon Glands

    Python 108 28

  2. StreamingCNN StreamingCNN Public

    To train deep convolutional neural networks, the input data and the activations need to be kept in memory. Given the limited memory available in current GPUs, this limits the maximum dimensions of …

    Jupyter Notebook 100 23

  3. pathology-whole-slide-data pathology-whole-slide-data Public

    A package for working with whole-slide data including a fast batch iterator that can be used to train deep learning models.

    Python 97 28

  4. pathology-streaming-pipeline pathology-streaming-pipeline Public

    Use streaming to train whole-slides images with single image-level labels, by reducing GPU memory requirements with 99%.

    Python 77 10

  5. pathology-hooknet pathology-hooknet Public

    Jupyter Notebook 57 11

  6. picai_labels picai_labels Public

    Annotations for the PI-CAI Challenge: Public Training and Development Dataset

    56 25

Repositories

Showing 10 of 189 repositories
  • website-content Public

    This repository stores all the content for the diag websites.

    DIAGNijmegen/website-content’s past year of commit activity
    TeX 6 MIT 76 28 (1 issue needs help) 18 Updated Mar 6, 2025
  • rse-gcapi Public

    Python client for the grand-challenge.org API

    DIAGNijmegen/rse-gcapi’s past year of commit activity
    Python 2 Apache-2.0 3 10 2 Updated Mar 5, 2025
  • dragon_prep Public

    Preprocessing scripts for the DRAGON benchmark

    DIAGNijmegen/dragon_prep’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 4, 2025
  • rse-pyswot Public

    Python implementation of JetBrains/swot

    DIAGNijmegen/rse-pyswot’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Mar 4, 2025
  • PANORAMA_gc_evaluator Public

    Evaluation for GC submissions to the PANORAMA challenge

    DIAGNijmegen/PANORAMA_gc_evaluator’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Mar 3, 2025
  • dragon_eval Public

    Evaluation method for the DRAGON challenge (dragon.grand-challenge.org)

    DIAGNijmegen/dragon_eval’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Mar 2, 2025
  • DIAGNijmegen/luna25-evaluation-public’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Feb 28, 2025
  • DIAGNijmegen/luna25-baseline-public’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Feb 28, 2025
  • MHubAI_models Public Forked from MHubAI/models

    Stores the MHub models dockerfiles and scripts.

    DIAGNijmegen/MHubAI_models’s past year of commit activity
    Python 1 MIT 17 0 0 Updated Feb 26, 2025
  • dragon_sample_reports Public

    Sample reports for the DRAGON benchmark (fully anonymized)

    DIAGNijmegen/dragon_sample_reports’s past year of commit activity
    5 0 0 0 Updated Feb 25, 2025