resources for learning bioinformatics

A data framework for biology.

Curated list of data science interview questions and answers

List of software/websites/databases/other stuff for genome engineering

R package for integrating and analyzing multiple single-cell datasets

DevOps Guide - Development to Production all configurations with basic notes to debug efficiently.

Lecture Notes on Computational and Mathematical Population Genetics

Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

Principal analysis code used in for analysis of single cell RNAseq of primary untreated colon cancer. As described in: "Spatially organized multicellular immune hubs in human colorectal cancer"

Code used to create the core and extended GBmap, including downstream analyses (cell-cell interactions, spatial transcriptomics deconvolution) and how to produce the figures.

A tool for semi-automatic cell type classification

<<python爬虫开发与项目实战>>书籍配套源码和说明

MetaTiME: Meta-components in Tumor immune MicroEnvironment

A fast and sensitive gapped read aligner

Her2 Breast Cancer Project

Data processing and analysis related code associated with the study "A single-cell and spatially resolved atlas of human breast cancers".

It's servered as a reference for myself.

Materials for Berkeley Connect in Computational Biology.

Config files for my GitHub profile.

A script for batch acquiring book isbn using Open Library APIs

An algorythm to encrypt email address when logging into third-party server

Rmd source files for the HarvardX series PH525x