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LungARGs Public
Forked from zhouyunyan/LungARGsThe antibiotic resistome of swine lower respiratory tract
R UpdatedJul 19, 2023 -
PSP-omics Public
This directory contains intermediate data files for the 16S amplicon data, metabolomic, and transcriptomic profiles of rats from three groups, as well as all the code used for the analysis in the p…
R UpdatedJul 17, 2023 -
Multi-omics_elderly_pigs Public template
This directory contains intermediate data files for the metagenomic, metabolomic, and lipidomic profiles of 45 pigs from three age groups, as well as all the code used for the analysis in the paper.
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SpatioTemporal_Analysis Public
Forked from OliInTheValley/SpatioTemporal_AnalysisThis GitHub repository documents the findings of a spatiotemporal RNA-seq study on mouse brain aging, including 1,076 samples from 15 regions spanning 7 ages and two rejuvenating interventions.
R UpdatedApr 21, 2023 -
COVID-19 Public
Forked from ShanlinKe/COVID-19Dissecting the Role of the Human Microbiome in COVID-19 via Metagenome-assembled Genomes
R MIT License UpdatedMar 14, 2023 -
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Manuscript-microbiota-ABO Public
Forked from yanghuijxau/Manuscript-microbiota-ABOR UpdatedMar 11, 2022 -
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COVIDPBMC Public
Forked from scCOVID-19/COVIDPBMCMulti-omics profiling of peripheral immune system response to SARS-CoV-2 infection
R GNU General Public License v3.0 UpdatedDec 21, 2021 -
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MultiOmicLand Public
MultiOmicLand is an R workflow that performs integrative analysis for microbiome-host multi-omic data, to identify microbiome-metabolite-host interaction links and generate hypotheses for microbial…
R UpdatedOct 7, 2021 -
uc-severity-multiomics Public
Forked from knightlab-analyses/uc-severity-multiomicsJupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedSep 1, 2021 -
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DMP Public
Forked from GRONINGEN-MICROBIOME-CENTRE/DMPCodes and sample data supporting the Dutch Microbiome Project. The preprint is currently available at https://www.biorxiv.org/content/10.1101/2020.11.27.401125v1 and full data can be requested from…
HTML UpdatedJun 24, 2021 -
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EasyMetagenome Public
Forked from YongxinLiu/EasyMetagenomeEasy Metagenome Pipeline 2019 (1.0)
Shell GNU General Public License v3.0 UpdatedMay 19, 2021 -
warming-network-complexity-stability Public
Forked from Mengting-Maggie-Yuan/warming-network-complexity-stabilityComputer code for the manuscript "Climate Warming Enhances Microbial Network Complexity and Stability"
R UpdatedMay 18, 2021 -
EasyAmplicon Public
Forked from YongxinLiu/EasyAmpliconEasy Amplicon data analysis pipeline
R GNU General Public License v3.0 UpdatedMay 18, 2021 -
RothSchulze_pregnancy-gut-microbiome-T1D Public
Forked from PapenfussLab/RothSchulze_pregnancy-gut-microbiome-T1DData, metadata and analyses performed in microbiome whole metagenomics sequencing data of women with and without T1D during pregnancy.
HTML UpdatedMay 18, 2021 -
metID Public
Forked from JustinZZW/metIDConstruct database and identify metabolites.
R GNU General Public License v3.0 UpdatedMay 11, 2021 -
Host-dependent-co-evolution-of-supplemented-probiotic Public
Forked from zhjch321123/Host-dependent-co-evolution-of-supplemented-probioticThe host-dependent co-evolution of supplemented probiotic and the indigenous gut microbiota
Jupyter Notebook UpdatedMay 9, 2021 -
Groningen-Microbiome Public
Forked from GRONINGEN-MICROBIOME-CENTRE/Groningen-MicrobiomeMicrobiome Projects from the Department of Genetics and Department of Gastroenterology and Hepatology , University Medical Centre Groningen
HTML UpdatedApr 12, 2021 -
ancient-microbiome-denovo Public
Forked from kosticlab/ancient-microbiome-denovoShell UpdatedApr 9, 2021 -
LOGODetect Public
Forked from ghm17/LOGODetectLOGODetect is a powerful tool to identify small segments that harbor local genetic correlation between two traits/diseases.
Python GNU General Public License v3.0 UpdatedApr 2, 2021