Include masked.db for testing

EvolBioInf · Aug 27, 2024 · 0a43d6c · 0a43d6c
1 parent d265a3b
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diff --git a/.gitignore b/.gitignore
@@ -41,6 +41,7 @@ experiments
 makeFurDb/*.db
 fur/*.db
 !fur/test.db
+!fur/masked.db
 
 # Programs
 checkPrim/checkPrim

diff --git a/fur/masked.db/dblist.txt b/fur/masked.db/dblist.txt
@@ -0,0 +1,10 @@
+masked.db/n1
+masked.db/n2
+masked.db/n3
+masked.db/n4
+masked.db/n5
+masked.db/n6
+masked.db/n7
+masked.db/n8
+masked.db/n9
+masked.db/n10
diff --git a/fur/masked.db/e.fasta b/fur/masked.db/e.fasta
@@ -0,0 +1,144 @@
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diff --git a/fur/masked.db/mask.asnb b/fur/masked.db/mask.asnb
diff --git a/fur/masked.db/n.nal b/fur/masked.db/n.nal
@@ -0,0 +1,7 @@
+#
+# Alias file created 08/23/2024 16:19:32
+#
+TITLE n
+DBLIST "masked.db/n1" "masked.db/n2" "masked.db/n3" "masked.db/n4" "masked.db/n5" "masked.db/n6" "masked.db/n7" "masked.db/n8" "masked.db/n9" "masked.db/n10" 
+NSEQ 10
+LENGTH 90000
diff --git a/fur/masked.db/n.txt b/fur/masked.db/n.txt
@@ -0,0 +1,2 @@
+length: 90000
+GC-content: 0.501033
diff --git a/fur/masked.db/n1.naa b/fur/masked.db/n1.naa
diff --git a/fur/masked.db/n1.nab b/fur/masked.db/n1.nab
diff --git a/fur/masked.db/n1.nac b/fur/masked.db/n1.nac
diff --git a/fur/masked.db/n1.ndb b/fur/masked.db/n1.ndb
diff --git a/fur/masked.db/n1.nhr b/fur/masked.db/n1.nhr
diff --git a/fur/masked.db/n1.nin b/fur/masked.db/n1.nin
diff --git a/fur/masked.db/n1.not b/fur/masked.db/n1.not
diff --git a/fur/masked.db/n1.nsq b/fur/masked.db/n1.nsq
diff --git a/fur/masked.db/n1.ntf b/fur/masked.db/n1.ntf
diff --git a/fur/masked.db/n1.nto b/fur/masked.db/n1.nto
diff --git a/fur/masked.db/n10.naa b/fur/masked.db/n10.naa
diff --git a/fur/masked.db/n10.nab b/fur/masked.db/n10.nab
diff --git a/fur/masked.db/n10.nac b/fur/masked.db/n10.nac
diff --git a/fur/masked.db/n10.ndb b/fur/masked.db/n10.ndb
diff --git a/fur/masked.db/n10.nhr b/fur/masked.db/n10.nhr
diff --git a/fur/masked.db/n10.nin b/fur/masked.db/n10.nin
diff --git a/fur/masked.db/n10.not b/fur/masked.db/n10.not
diff --git a/fur/masked.db/n10.nsq b/fur/masked.db/n10.nsq
diff --git a/fur/masked.db/n10.ntf b/fur/masked.db/n10.ntf
diff --git a/fur/masked.db/n10.nto b/fur/masked.db/n10.nto
diff --git a/fur/masked.db/n2.naa b/fur/masked.db/n2.naa
diff --git a/fur/masked.db/n2.nab b/fur/masked.db/n2.nab
diff --git a/fur/masked.db/n2.nac b/fur/masked.db/n2.nac
diff --git a/fur/masked.db/n2.ndb b/fur/masked.db/n2.ndb
diff --git a/fur/masked.db/n2.nhr b/fur/masked.db/n2.nhr
diff --git a/fur/masked.db/n2.nin b/fur/masked.db/n2.nin
diff --git a/fur/masked.db/n2.not b/fur/masked.db/n2.not
diff --git a/fur/masked.db/n2.nsq b/fur/masked.db/n2.nsq
diff --git a/fur/masked.db/n2.ntf b/fur/masked.db/n2.ntf
diff --git a/fur/masked.db/n2.nto b/fur/masked.db/n2.nto
diff --git a/fur/masked.db/n3.naa b/fur/masked.db/n3.naa
diff --git a/fur/masked.db/n3.nab b/fur/masked.db/n3.nab
diff --git a/fur/masked.db/n3.nac b/fur/masked.db/n3.nac
diff --git a/fur/masked.db/n3.ndb b/fur/masked.db/n3.ndb
diff --git a/fur/masked.db/n3.nhr b/fur/masked.db/n3.nhr
diff --git a/fur/masked.db/n3.nin b/fur/masked.db/n3.nin
diff --git a/fur/masked.db/n3.not b/fur/masked.db/n3.not
diff --git a/fur/masked.db/n3.nsq b/fur/masked.db/n3.nsq
diff --git a/fur/masked.db/n3.ntf b/fur/masked.db/n3.ntf
diff --git a/fur/masked.db/n3.nto b/fur/masked.db/n3.nto
diff --git a/fur/masked.db/n4.naa b/fur/masked.db/n4.naa
diff --git a/fur/masked.db/n4.nab b/fur/masked.db/n4.nab
diff --git a/fur/masked.db/n4.nac b/fur/masked.db/n4.nac
diff --git a/fur/masked.db/n4.ndb b/fur/masked.db/n4.ndb
diff --git a/fur/masked.db/n4.nhr b/fur/masked.db/n4.nhr
diff --git a/fur/masked.db/n4.nin b/fur/masked.db/n4.nin
diff --git a/fur/masked.db/n4.not b/fur/masked.db/n4.not
diff --git a/fur/masked.db/n4.nsq b/fur/masked.db/n4.nsq
diff --git a/fur/masked.db/n4.ntf b/fur/masked.db/n4.ntf
diff --git a/fur/masked.db/n4.nto b/fur/masked.db/n4.nto
diff --git a/fur/masked.db/n5.naa b/fur/masked.db/n5.naa
diff --git a/fur/masked.db/n5.nab b/fur/masked.db/n5.nab
diff --git a/fur/masked.db/n5.nac b/fur/masked.db/n5.nac
diff --git a/fur/masked.db/n5.ndb b/fur/masked.db/n5.ndb
diff --git a/fur/masked.db/n5.nhr b/fur/masked.db/n5.nhr
diff --git a/fur/masked.db/n5.nin b/fur/masked.db/n5.nin
diff --git a/fur/masked.db/n5.not b/fur/masked.db/n5.not
diff --git a/fur/masked.db/n5.nsq b/fur/masked.db/n5.nsq
diff --git a/fur/masked.db/n5.ntf b/fur/masked.db/n5.ntf
diff --git a/fur/masked.db/n5.nto b/fur/masked.db/n5.nto
diff --git a/fur/masked.db/n6.naa b/fur/masked.db/n6.naa
diff --git a/fur/masked.db/n6.nab b/fur/masked.db/n6.nab
diff --git a/fur/masked.db/n6.nac b/fur/masked.db/n6.nac
diff --git a/fur/masked.db/n6.ndb b/fur/masked.db/n6.ndb
diff --git a/fur/masked.db/n6.nhr b/fur/masked.db/n6.nhr
diff --git a/fur/masked.db/n6.nin b/fur/masked.db/n6.nin
diff --git a/fur/masked.db/n6.not b/fur/masked.db/n6.not
diff --git a/fur/masked.db/n6.nsq b/fur/masked.db/n6.nsq
diff --git a/fur/masked.db/n6.ntf b/fur/masked.db/n6.ntf
diff --git a/fur/masked.db/n6.nto b/fur/masked.db/n6.nto
diff --git a/fur/masked.db/n7.naa b/fur/masked.db/n7.naa
diff --git a/fur/masked.db/n7.nab b/fur/masked.db/n7.nab
diff --git a/fur/masked.db/n7.nac b/fur/masked.db/n7.nac
diff --git a/fur/masked.db/n7.ndb b/fur/masked.db/n7.ndb
diff --git a/fur/masked.db/n7.nhr b/fur/masked.db/n7.nhr
diff --git a/fur/masked.db/n7.nin b/fur/masked.db/n7.nin
diff --git a/fur/masked.db/n7.not b/fur/masked.db/n7.not
diff --git a/fur/masked.db/n7.nsq b/fur/masked.db/n7.nsq
diff --git a/fur/masked.db/n7.ntf b/fur/masked.db/n7.ntf
diff --git a/fur/masked.db/n7.nto b/fur/masked.db/n7.nto
diff --git a/fur/masked.db/n8.naa b/fur/masked.db/n8.naa
diff --git a/fur/masked.db/n8.nab b/fur/masked.db/n8.nab
diff --git a/fur/masked.db/n8.nac b/fur/masked.db/n8.nac
diff --git a/fur/masked.db/n8.ndb b/fur/masked.db/n8.ndb
diff --git a/fur/masked.db/n8.nhr b/fur/masked.db/n8.nhr
diff --git a/fur/masked.db/n8.nin b/fur/masked.db/n8.nin
diff --git a/fur/masked.db/n8.not b/fur/masked.db/n8.not
diff --git a/fur/masked.db/n8.nsq b/fur/masked.db/n8.nsq
diff --git a/fur/masked.db/n8.ntf b/fur/masked.db/n8.ntf
diff --git a/fur/masked.db/n8.nto b/fur/masked.db/n8.nto
diff --git a/fur/masked.db/n9.naa b/fur/masked.db/n9.naa
diff --git a/fur/masked.db/n9.nab b/fur/masked.db/n9.nab
diff --git a/fur/masked.db/n9.nac b/fur/masked.db/n9.nac
diff --git a/fur/masked.db/n9.ndb b/fur/masked.db/n9.ndb
diff --git a/fur/masked.db/n9.nhr b/fur/masked.db/n9.nhr
diff --git a/fur/masked.db/n9.nin b/fur/masked.db/n9.nin
diff --git a/fur/masked.db/n9.not b/fur/masked.db/n9.not
diff --git a/fur/masked.db/n9.nsq b/fur/masked.db/n9.nsq
diff --git a/fur/masked.db/n9.ntf b/fur/masked.db/n9.ntf
diff --git a/fur/masked.db/n9.nto b/fur/masked.db/n9.nto