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stefano-marchesin authored Nov 11, 2021
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Expand Up @@ -82,7 +82,7 @@ Users can deploy SKET using ```run_med_sket.py```. We release within ```./exampl
Furthermore, SKET exhibits a tunable ```threshold``` parameter that can be tuned to decide the harshness of the entity linking component. The higher the ```threshold```, the more precise the model -- at the expense of recall -- and vice versa. Users can fine-tune this parameter to obtain the desired trade-off between precision and recall. Note that ```threshold``` must always be lower than or equal to the number of considered matching models. Otherwise, the entity linking component does not return any concept.

The available matching models, in form of SKET parameters, are: <br />
```biow2v```: the scispacy pretrained word embeddings. Set this parameter to ```True``` to use them. <br />
```biow2v```: the ScispaCy pretrained word embeddings. Set this parameter to ```True``` to use them. <br />
```biofast```: the fastText model. Set this parameter to ```/path/to/fastText/file``` to use fastText. <br />
```biobert```: the BERT model. Set this parameter to ```bert-name``` to use BERT (see https://huggingface.co/transformers/pretrained_models.html for model IDs). <br />
```str_match```: the Gestalt Pattern Matching (GPM) model. Set this parameter to ```True``` to use GPM.
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