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CellRank: dynamics from multi-view single-cell data

Python 372 48 Updated Feb 17, 2025

A tool for semi-automatic cell type classification

Python 338 46 Updated Dec 16, 2024

This repo offers a simple interface that helps you to read&summerize research papers in pdf format. You can ask some questions after reading. This interface is developed based on openai API and usi…

Python 751 112 Updated Feb 20, 2024

Enhanced ChatGPT Clone: Features Agents, DeepSeek, Anthropic, AWS, OpenAI, Assistants API, Azure, Groq, o1, GPT-4o, Mistral, OpenRouter, Vertex AI, Gemini, Artifacts, AI model switching, message se…

TypeScript 22,853 3,827 Updated Mar 6, 2025

🤯 Lobe Chat - an open-source, modern-design AI chat framework. Supports Multi AI Providers( OpenAI / Claude 3 / Gemini / Ollama / DeepSeek / Qwen), Knowledge Base (file upload / knowledge managemen…

TypeScript 57,207 12,159 Updated Mar 7, 2025

PDF scientific paper translation with preserved formats - 基于 AI 完整保留排版的 PDF 文档全文双语翻译,支持 Google/DeepL/Ollama/OpenAI 等服务,提供 CLI/GUI/Docker/Zotero

Python 18,235 1,493 Updated Mar 6, 2025

✨ Light and Fast AI Assistant. Support: Web | iOS | MacOS | Android | Linux | Windows

TypeScript 81,688 61,195 Updated Mar 3, 2025

🤖 The free, Open Source alternative to OpenAI, Claude and others. Self-hosted and local-first. Drop-in replacement for OpenAI, running on consumer-grade hardware. No GPU required. Runs gguf, transf…

Go 30,865 2,330 Updated Mar 6, 2025

A high-quality tool for convert PDF to Markdown and JSON.一站式开源高质量数据提取工具,将PDF转换成Markdown和JSON格式。

Python 27,520 2,119 Updated Mar 6, 2025

全网最全-2025年AI领域最值得关注的两百位博主和一手信息源盘点

56 4 Updated Jan 9, 2025

为GPT/GLM等LLM大语言模型提供实用化交互接口,特别优化论文阅读/润色/写作体验,模块化设计,支持自定义快捷按钮&函数插件,支持Python和C++等项目剖析&自译解功能,PDF/LaTex论文翻译&总结功能,支持并行问询多种LLM模型,支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

Python 67,792 8,317 Updated Mar 4, 2025

A Python toolkit for flow cytometry analysis supporting GatingML and FlowJo workspaces

Python 166 48 Updated Jan 15, 2025

trajectory inference

Jupyter Notebook 96 21 Updated Jan 27, 2025

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

Jupyter Notebook 239 57 Updated Feb 17, 2025

CytoTRACE 2 is an interpretable AI method for predicting cellular potency and absolute developmental potential from scRNA-seq data.

R 122 10 Updated Jan 29, 2025

Repository for paper scMulan: a multitask generative pre-trained language model for single-cell analysis.

Jupyter Notebook 56 7 Updated May 30, 2024

Python package to perform enrichment analysis from omics data.

Python 181 27 Updated Feb 7, 2025

Synthetic datasets for geoscience (geo)statistical modeling

93 119 Updated Jul 12, 2024

🎨 Python Echarts Plotting Library

Python 15,145 2,859 Updated Feb 13, 2025

Open-source Windows and Office activator featuring HWID, Ohook, TSforge, KMS38, and Online KMS activation methods, along with advanced troubleshooting.

Batchfile 123,906 12,063 Updated Feb 23, 2025

Python package to find communication-driven intercellular flows from single-cell RNA-sequencing and spatial transcriptomics data.

Python 67 1 Updated Jan 7, 2025

Rcpp Machine Learning: Fast robust NMF, divisive clustering, and more

C++ 105 17 Updated Mar 8, 2024

R toolkit for inference, visualization and analysis of cell-cell communication from single-cell and spatially resolved transcriptomics

R 363 58 Updated Dec 11, 2024

A pytorch package for non-negative matrix factorization.

Python 236 23 Updated Jul 25, 2024
Jupyter Notebook 10 5 Updated Jan 2, 2024
HTML 186 35 Updated May 6, 2024

很多镜像都在国外。比如 gcr 。国内下载很慢,需要加速。致力于提供连接全世界的稳定可靠安全的容器镜像服务。

Shell 8,695 1,080 Updated Mar 6, 2025

Declarative creation of composable visualization for Python (Complex heatmap, Upset plot, Oncoprint and more~)

Python 247 9 Updated Feb 13, 2025

reticulate-free single cell format conversion

R 127 8 Updated Dec 6, 2024

Rapids_singlecell: A GPU-accelerated tool for scRNA analysis. Offers seamless scverse compatibility for efficient single-cell data processing and analysis.

Python 175 25 Updated Mar 4, 2025
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