Phylogenetic Investigation of Communities by Reconstruction of Unobserved STates (PICRUST): Official repository for software and unit tests

A set of R functions that help faciliate a lot of tedious processing

Differential expression of RNA-seq data using the Negative Binomial

phyloseq is a set of classes, wrappers, and tools (in R) to make it easier to import, store, and analyze phylogenetic sequencing data; and to reproducibly share that data and analysis with others. …

Import qiime2 artifacts to R

Training material for introductory R / Bioconductor courses

Amplicon sequencing workflow heavily using DADA2 and implemented in snakemake

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An R package for data analysis in microbial community ecology

Using R language in microbiome analysis

Filtering and trimming of long read sequencing data

Accurate sample inference from amplicon data with single nucleotide resolution

R package for community ecologists: popular ordination methods, ecological null models & diversity analysis

Statistics and visualization for amplicon data