Tags: Fluorescence-Tools/tttrlib
Tags
Add confocor3 support (#30) * upgrade pip * Upload linux wheels * Upload non master to testpypi * Add windows wheel * windows wheel * windows wheel * Windows wheel * Skip existing wheels * Use prebuild docker img for windows * Windows wheels * skip win32 and pypy * FFTW dir in windows build * Compiler flags for HDF5 and fftw * Use fftw only with ICS * Add swig * Mask hdf5 dependency * Mask hdf5 * Fix if close * Hdf5 issue * Static boost linking * Windows boost linking * win boost * remove boost system * static boost * boost exception issue * Use vcpkg on win * Static boost builds * avoid boost * Fix typo * auto link * linking * Build photon hdf by default * Remove openmp dependency * remove boost::filesystem and locale depency * remove boost:locale * Enable language * remove vcpkg * only boost header * remove pip swig cmake boost * add cmake * Use cmake findpython * switch findpzthon3 for findpython * Set DPython_ROOT_DIR in setup.py * Add swig * remove cmake swig * remove cmake submodule * move cmake files from submodule to folder * remove cmake submodule * Add pocketfft * Reduce boost dependency * Remove unused import * Move other peoples code to external * Move other peoples code to external * Move to external * Refactoring * refactor * Add itlib * Restore * Add aglib * Add aglib * Add optimization wrapper * Add optimization wrapper * Add msstl * use itlib flat_set * Cleanup * Cleanup * bump version * separate external include files * cleanup * Add documentation * win issue * Use BUILD_PYTHON_DOCS * Win issue * win build issue * Move external thirdparty code to highlight other projects code external third party code is moved to thirdparty folder. * Remove boost dependency * Static linking of boost remove uneeded boost dependency and link (just in case) boost statically * switch fftw for pocketfftw * switch fftw for pocketfftw * fftw -> pocketfft * Fix typos * remove boost fftw * update license info * remote fftw * cleanup namespace * Add windows wheel Dockerfile * Add wheel:win build * Remove unused config * fix indentation * Fix typo * use cmd.exe for wheel:win * use cmd for whee:win * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Simplify test * fix skip on linux * fix wheel:win pypi upload * Add pwsh to docker * Update .gitlab-ci.yml file * fix * xx * ff * hfd * Update file .gitlab-ci.yml * Update file pocketfft_hdronly.h * Add example writing CLSM data * Windows * new c++ on osx * Dynamic hdf5 lib * fix call * wheel build * add header setter * doc fixes * add windows wheel * docs * docs * add osx:wheel * macos wheel * osx fixes * macos wheel * use modern c++ on osx * wheel osx fix * doc fix * Fix badges and license * Removed TODO * doc fixes * DOC FIX * Also upload development docs * doc build fix * Docs buil * docs building * fix doc * fix doc * Redirect RTD page to docs * Support more py versions * docs deposit * pin boost * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Compile wheel for py311 * Set min macos version * Update .gitlab-ci.yml * Update .gitlab-ci.yml * Specify mmacosx version * Update .gitlab-ci.yml * Cleanup * Cleanup * Add read clsm settings method * Add mask flip * Fix typo * Add option for mask * Change default masking. * Bump version * Pypi 2fa requires tokens * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Replace old np.float types * Replace old np.float types * Fix TTTRMask issue need to flip * Improved documentation * Separate doc from doc-tttrlib env * Fix typo * Fix typo * Fix bixtex issue * Fix doxygen issue * Bump version * Improve docstrings * Additional sphinx modules * Fix typo * Fix typo * Fix issue of deprecated std * Remove missing sphinx-extension * Fix windows build * Fix doc deploy * Fix doc deploy * Fix doc deploy * Fix doc deploy * Fix Pda histogram_function * fix wrong path * CI gitlab github sync * Fix doc issues * Add stubs for doc * Add stubs for doc * Fix wrong path * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml * Update pyproject.toml * Add github action * Remove gitlab webide config * Remove gitlab webide config * Remove github action demo * Add Zeiss Confocor3 reader * Fix set_header issue Assigning a raw pointer when using set_header can cause a double free. Use copy constructor instead. * Add x, y attribute to Correlator.py * Also run Correlator when accessing axis * Add Confocor3 support * Add Confocor3 support * Cleanup * Cleanup * Fix wrong link * Remove old interface * Remove work in progress file * Fix plot Remove old interface Adjust plot range * Fix plot Remove old interface Adjust plot range * Fix typo * Fix file path * Fix plot Increase number of photons for MLE and measure time. * Bump version * Build on all platforms * Update plot * Update recipe Use libboost-devel instead of boost-cpp Use matplotlib-base instead of matplotlib -> no qt5 dependency * Ignore .cache dir * No gpg check on yum * Fix header issue * Build issues on Windows * Do not use git in conda builds * Fix MY_INSTALL_PREFIX * Conda windows build issues * Remove tools submodule * Add tools submodule --------- Co-authored-by: tpeulen <[email protected]> Co-authored-by: Thomas-Otavio Peulen <[email protected]> Co-authored-by: Administrator <[email protected]>
Development (#29) * cmake update * submodule update * Fix pip build * Update license * Update license * license update * fix license issue * Test AVX * Ignore .vscode folder * Cleanup pip build * Cleanup pip build * Try building with cibuildwheel * Build wheel * wheel build * build wheel * Improve imports * Fix compilation * Update author list * Fix pip build * Add option to build library * Add license * Add license * Gitlab build wheel * Add missing dependency * Add reference * Add wheel build * Update .gitlab-ci.yml file * Gitlab build * Update .gitlab-ci.yml file * Update submodule in wheel build * Update submodule * twine upload * add build tags * Twine * Fix pyi classifier * upgrade pip * Upload linux wheels * Upload non master to testpypi * Add windows wheel * windows wheel * windows wheel * Windows wheel * Skip existing wheels * Use prebuild docker img for windows * Windows wheels * skip win32 and pypy * FFTW dir in windows build * Compiler flags for HDF5 and fftw * Use fftw only with ICS * Add swig * Mask hdf5 dependency * Mask hdf5 * Fix if close * Hdf5 issue * Static boost linking * Windows boost linking * win boost * remove boost system * static boost * boost exception issue * Use vcpkg on win * Static boost builds * avoid boost * Fix typo * auto link * linking * Build photon hdf by default * Remove openmp dependency * remove boost::filesystem and locale depency * remove boost:locale * Enable language * remove vcpkg * only boost header * remove pip swig cmake boost * add cmake * Use cmake findpython * switch findpzthon3 for findpython * Set DPython_ROOT_DIR in setup.py * Add swig * remove cmake swig * remove cmake submodule * move cmake files from submodule to folder * remove cmake submodule * Add pocketfft * Reduce boost dependency * Remove unused import * Move other peoples code to external * Move other peoples code to external * Move to external * Refactoring * refactor * Add itlib * Restore * Add aglib * Add aglib * Add optimization wrapper * Add optimization wrapper * Add msstl * use itlib flat_set * Cleanup * Cleanup * bump version * separate external include files * cleanup * Add documentation * win issue * Use BUILD_PYTHON_DOCS * Win issue * win build issue * Move external thirdparty code to highlight other projects code external third party code is moved to thirdparty folder. * Remove boost dependency * Static linking of boost remove uneeded boost dependency and link (just in case) boost statically * switch fftw for pocketfftw * switch fftw for pocketfftw * fftw -> pocketfft * Fix typos * remove boost fftw * update license info * remote fftw * cleanup namespace * Add windows wheel Dockerfile * Add wheel:win build * Remove unused config * fix indentation * Fix typo * use cmd.exe for wheel:win * use cmd for whee:win * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Simplify test * fix skip on linux * fix wheel:win pypi upload * Add pwsh to docker * Update .gitlab-ci.yml file * fix * xx * ff * hfd * Update file .gitlab-ci.yml * Update file pocketfft_hdronly.h * Add example writing CLSM data * Windows * new c++ on osx * Dynamic hdf5 lib * fix call * wheel build * add header setter * doc fixes * add windows wheel * docs * docs * add osx:wheel * macos wheel * osx fixes * macos wheel * use modern c++ on osx * wheel osx fix * doc fix * Fix badges and license * Removed TODO * doc fixes * DOC FIX * Also upload development docs * doc build fix * Docs buil * docs building * fix doc * fix doc * Redirect RTD page to docs * Support more py versions * docs deposit * pin boost * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Compile wheel for py311 * Set min macos version * Update .gitlab-ci.yml * Update .gitlab-ci.yml * Specify mmacosx version * Update .gitlab-ci.yml * Cleanup * Cleanup * Add read clsm settings method * Add mask flip * Fix typo * Add option for mask * Change default masking. * Bump version * Pypi 2fa requires tokens * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Replace old np.float types * Replace old np.float types * Fix TTTRMask issue need to flip * Improved documentation * Separate doc from doc-tttrlib env * Fix typo * Fix typo * Fix bixtex issue * Fix doxygen issue * Bump version * Improve docstrings * Additional sphinx modules * Fix typo * Fix typo * Fix issue of deprecated std * Remove missing sphinx-extension * Fix windows build * Fix doc deploy * Fix doc deploy * Fix doc deploy * Fix doc deploy * Fix Pda histogram_function * fix wrong path * CI gitlab github sync * Fix doc issues * Add stubs for doc * Add stubs for doc * Fix wrong path * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml file * Update .gitlab-ci.yml * Update pyproject.toml * Add github action * Remove gitlab webide config * Remove gitlab webide config * Remove github action demo --------- Co-authored-by: tpeulen <[email protected]> Co-authored-by: Thomas-Otavio Peulen <[email protected]> Co-authored-by: Administrator <[email protected]>
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