🖼️ Create beautiful maps from OpenStreetMap data in a streamlit webapp

ULMFiT for Genomic Sequence Data

Matplotlib styles for scientific plotting

PyWGCNA is a Python package designed to do Weighted Gene Correlation Network analysis (WGCNA)

BAGEL software

This project is a scalable unified framework for deep graph clustering.

RNA-seq prediction with deep convolutional neural networks.

BertViz: Visualize Attention in NLP Models (BERT, GPT2, BART, etc.)

Biological sequence analysis for the modern age.

NEW location of IQ-TREE software for efficient phylogenomic software by maximum likelihood http://www.iqtree.org

Align proteins to genomes with splicing and frameshift

Fast genome-wide functional annotation through orthology assignment

[ICLR 2024] DNABERT-2: Efficient Foundation Model and Benchmark for Multi-Species Genome

ChromBERT: Uncovering Chromatin State Motifs in the Human Genome using a BERT-based Approach

Bookup custom Quarto HTML format

Awesome Deep Graph Clustering is a collection of SOTA, novel deep graph clustering methods (papers, codes, and datasets).

AlphaFold 3 inference pipeline.

A curated list of Quarto talks, tools, examples & articles! Contributions welcome!

A clean, minimalist quarto theme for your data analysis reports

SVG icons for popular brands

SuperDendrix, an algorithm for identifying differential dependencies and associated genomic features.

Graph Similarity Description: How Are These Graphs Similar? (KDD 2021)

deep learning-inspired explainable sequence model for transcription initiation

Network Diffusion Library - (for NetworkX and iGraph)

A graph drawing tool for large graph visualization.

TensorFlow CNN for fast style transfer ⚡🖥🎨🖼

✏️ Neural Style Transfer: A Review