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@Genentech

Genentech

Dedicated to pursuing groundbreaking science to discover and develop medicines

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  1. equifold equifold Public

    Official code repository for EquiFold: Protein Structure Prediction with a Novel Coarse-Grained Structure Representation

    Python 121 17

  2. scimilarity scimilarity Public

    A unifying representation of single cell expression profiles that quantifies similarity between expression states and generalizes to represent new studies without additional training.

    Python 184 7

  3. polygraph polygraph Public

    Polygraph evaluates and compares groups of nucleic acid sequences based on their sequence and functional content for effective design of regulatory elements.

    Jupyter Notebook 28

  4. gReLU gReLU Public

    gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

    Python 256 32

Repositories

Showing 10 of 114 repositories
  • BayesERbook Public
    Genentech/BayesERbook’s past year of commit activity
    R 1 1 2 0 Updated Apr 19, 2025
  • spex Public
    Genentech/spex’s past year of commit activity
    Jupyter Notebook 0 0 1 0 Updated Apr 19, 2025
  • spex_spatial_transcriptomics Public
    Genentech/spex_spatial_transcriptomics’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 19, 2025
  • spex_segmentation Public
    Genentech/spex_segmentation’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Apr 17, 2025
  • beignet Public

    A standard library for biological research.

    Genentech/beignet’s past year of commit activity
    Python 24 MIT 5 32 21 Updated Apr 16, 2025
  • gReLU Public

    gReLU is a python library to train, interpret, and apply deep learning models to DNA sequences.

    Genentech/gReLU’s past year of commit activity
    Python 256 MIT 32 21 7 Updated Apr 15, 2025
  • jmpost Public
    Genentech/jmpost’s past year of commit activity
    R 17 4 55 (1 issue needs help) 1 Updated Apr 15, 2025
  • Firmament Public

    Provides method to perform gene signature search

    Genentech/Firmament’s past year of commit activity
    Python 1 MIT 0 0 0 Updated Apr 15, 2025
  • spex_clustering Public
    Genentech/spex_clustering’s past year of commit activity
    Python 0 0 0 0 Updated Apr 15, 2025
  • decima Public

    Decima is a Python library to train sequence models on single-cell RNA-seq data.

    Genentech/decima’s past year of commit activity
    Jupyter Notebook 33 5 1 0 Updated Apr 10, 2025
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