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Aila(AI超元域): The premier AI integration tool for Windows, macOS, and Android. Ask once, get answers from 10+ AIs like ChatGPT, Gemini, Claude3, Copilot, Poe, perplexity and more. Features customiza…

C# 934 170 Updated Dec 28, 2024

为GPT/GLM等LLM大语言模型提供实用化交互接口,特别优化论文阅读/润色/写作体验,模块化设计,支持自定义快捷按钮&函数插件,支持Python和C++等项目剖析&自译解功能,PDF/LaTex论文翻译&总结功能,支持并行问询多种LLM模型,支持chatglm3等本地模型。接入通义千问, deepseekcoder, 讯飞星火, 文心一言, llama2, rwkv, claude2, m…

Python 66,886 8,210 Updated Jan 12, 2025

A Snakemake pipeline to perform BSA-seq to identify causal the recessive mutation(s) underlying a mutant phenotype

Python 1 Updated Apr 6, 2023

MutMap pipeline to identify causative mutations responsible for a phenotype

Python 52 16 Updated Oct 18, 2024

Multple methods for BSA Pipeline

R 8 4 Updated Dec 22, 2019

The analysis pipeline of BSA-seq. Just for information purposes. Not a fully fledged container

R 2 3 Updated Oct 12, 2018

zUMIs: A fast and flexible pipeline to process RNA sequencing data with UMIs

R 276 67 Updated Jul 12, 2024

RNAseq analysis notes from Ming Tang

Python 971 304 Updated Nov 15, 2021

Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file form…

R 1,350 621 Updated May 31, 2023

RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.

Nextflow 957 717 Updated Jan 13, 2025

A repository for setting up a RNAseq workflow

R 421 182 Updated Apr 10, 2017

QTLseqr is an R package for QTL mapping using NGS Bulk Segregant Analysis

R 69 42 Updated Jan 20, 2020

A novel algorithm with high detection power for BSA-Seq data analysis - the significant structural variant method

Python 31 12 Updated Jan 9, 2025

Data for use with QTLseqr vignette

2 3 Updated Oct 25, 2017

Scripts used to perform bulk segregant analysis in Brassica napus

Python 8 4 Updated Feb 11, 2019

This repository including scripts for Bulk Segregant Analysis with B.napus

1 Updated Jul 30, 2020

This repository including scripts for Bulk Segregant Analysis with B.napus

1 1 Updated Jul 30, 2020

lab manual for MCB160L bulk segregant mapping lab

HTML 1 1 Updated Oct 15, 2023

DeepBSA is a novel bulked segregant analysis (BSA) software for the dissection of complex traits.

17 2 Updated Aug 6, 2024

Bulked segregation analysis tools for outbreeding species(BSATOS)

Perl 5 3 Updated Dec 6, 2023

Tutorial for bulk segregant analysis using Python

Jupyter Notebook 9 2 Updated Mar 16, 2021

Graph-based Sequence Assembly Toolkit

Perl 1 Updated Nov 22, 2022

Bulked-Segregant Analysis using vcf file with or without parents

Perl 25 9 Updated Dec 20, 2024

Phylogenetic orthology inference for comparative genomics

Python 734 191 Updated Oct 22, 2024

Code repository for O'Reilly book

Jupyter Notebook 2,859 1,788 Updated Jan 7, 2025

NOVOPlasty - The organelle assembler and heteroplasmy caller

Perl 182 71 Updated Feb 4, 2024

MitoDNA extending assembler from NGS data

C++ 20 4 Updated Jan 3, 2024

Sequence analysis following the BioStars handbook

Shell 1 1 Updated Jul 29, 2020

Quickly search, compare, and analyze genomic and metagenomic data sets.

Python 483 80 Updated Jan 14, 2025

Making bioinformatics fun again

Python 62 14 Updated May 29, 2024
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