CellANOVA: Cell State Space Analysis of Variance for signal recovery in single cell batch integration

Demultiplexing pooled scRNA-seq data with or without genotype reference

Code and example data for running Consensus Non-negative Matrix Factorization on single-cell RNA-Seq data

Single Cell Analysis of Five'Ends

Stable version

A 'ggplot2' Extension for Consistent Axis Alignment

PaCMAP: Large-scale Dimension Reduction Technique Preserving Both Global and Local Structure

Open-ST: profile and analyze tissue transcriptomes in 3D with high resolution in your lab

Optimal refinement of biomarkers signatures made easy

Collections of library structure and sequence of popular single cell genomic methods

ColonnaLab-WebPage

Pod5: a high performance file format for nanopore reads.

A deep learning-based tool to identify splice variants

Pangolin is a deep-learning method for predicting splice site strengths.

The first deep learning based Nanopore simulator which can simulate the process of Nanopore sequencing.

Plotting scripts for long read sequencing data

Ploidy agnostic phasing pipeline and algorithm

Pipeline to convert a haploid assembly into diploid

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

SIMD partial order alignment tool/library

HDF5-based container format for Methylation calls from long reads

Oxford Nanopore's Basecaller

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

RTG Tools: Utilities for accurate VCF comparison and manipulation

Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers

Prediction of the binding specificity of transcription factors using support vector regression