Gzip Decompression and Random Access for Modern Multi-Core Machines

vcfdist: Accurately benchmarking phased variant calls

Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs

A C++ header-only ZLib wrapper

Pipeline to convert a haploid assembly into diploid

PEPPER-Margin-DeepVariant

Hybrid error correction of long reads using colored de Bruijn graphs

Fast compressed trie dictionary library

Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling

VCF files of SVs using long-read sequencing (LRS).

Bifrost graph gene caller.

Fortran Standard Library

Fortran Package Manager (fpm)

Reference-based variant calling pipeline for a pair of phased haplotype assemblies

Unzip assembly graphs with Hi-C data and/or long reads.

Long read / genome alignment software

abPOA: an SIMD-based C library for fast partial order alignment using adaptive band

Unfazed by genomic variant phasing

DeepVariant is an analysis pipeline that uses a deep neural network to call genetic variants from next-generation DNA sequencing data.

Public domain cross platform lock free thread caching 16-byte aligned memory allocator implemented in C

Structural Variant Identification Method using Long Reads

Python bindings for Bifrost with a NetworkX compatible API

UME::SIMD A library for explicit simd vectorization.

Clair: Exploring the limit of using deep neural network on pileup data for germline variant calling

SIMD partial order alignment tool/library

Hifiasm: a haplotype-resolved assembler for accurate Hifi reads

Human Pangenome Reference Consortium - HG002 Data Freeze (v1.0)