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HUST-DataMan authored Dec 8, 2020
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# HCMB
This is an an algorithm, Hi-C Matrix Balancing (HCMB), based on iterative solution of equations, combining with linear search and projection strategy to normalize the hi-C original interaction data.
This is an an algorithm, Hi-C Matrix Balancing (HCMB), based on iterative solution of equations, combining with linear search and projection strategy to normalize the Hi-C original interaction data.

Several useful functions:

HCMB
main code of HCMB algorithm
1. main code of HCMB algorithm

get_norm_HCMB
use HCMB to normalize Hi-C contact maps data
1. use HCMB to normalize Hi-C contact maps data
input: raw matrix
output: normlaize matrix, minvalue, maxvalue, running time


NormalizeKnightRuizV2
python version of Knight Ruiz algorithm for matrix balancing (Knight et al. 2013)
1. python version of Knight Ruiz algorithm for matrix balancing (Knight et al. 2013)
This python code is from Rajendra,K. et al. (2017)

and a few functions for plotting and so on.


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