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Update README.md
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rschwess authored Oct 8, 2021
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Expand Up @@ -11,20 +11,20 @@ Links to data for training used for the manuscript and additional results summar
### Links

* pre-processed Hi-C data for deepC training and skeleton visualization
* GM12878_primary at [5kb](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/data_GM12878_5kb_regression.txt.tar.gz)
and [10kb](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/data_GM12878_10kb_regression.txt.tar.gz)
* GM12878_primary at [5kb](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/data_GM12878_5kb_regression.txt.tar.gz)
and [10kb](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/data_GM12878_10kb_regression.txt.tar.gz)
resolution
* GM12878_combined at [5kb](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/data_GM12878_combined_5kb_regression.txt.tar.gz)
* K562 at [5kb](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/data_K562_5kb_regression.txt.tar.gz)
and [10kb](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/data_K562_10kb_regression.txt.tar.gz)
* KBM7 at [10kb](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/data_KBM7_10kb_regression.txt.tar.gz)
* IMR90 at [10kb](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/data_IMR90_10kb_regression.txt.tar.gz)
* HMEC at [10kb](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/data_HMEC_10kb_regression.txt.tar.gz)
* HUVEC at [10kb](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/data_HUVEC_10kb_regression.txt.tar.gz)
* NHEK at [10kb](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/data_NHEK_10kb_regression.txt.tar.gz)
* GM12878_combined at [5kb](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/data_GM12878_combined_5kb_regression.txt.tar.gz)
* K562 at [5kb](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/data_K562_5kb_regression.txt.tar.gz)
and [10kb](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/data_K562_10kb_regression.txt.tar.gz)
* KBM7 at [10kb](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/data_KBM7_10kb_regression.txt.tar.gz)
* IMR90 at [10kb](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/data_IMR90_10kb_regression.txt.tar.gz)
* HMEC at [10kb](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/data_HMEC_10kb_regression.txt.tar.gz)
* HUVEC at [10kb](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/data_HUVEC_10kb_regression.txt.tar.gz)
* NHEK at [10kb](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/data_NHEK_10kb_regression.txt.tar.gz)


* model [weights](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/saved_conv_weights_dhw_5layer_1k_pool.npz) of pre-trained chromatin feature model for seeding human deepC runs in transfer learning mode
* model [weights](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/saved_conv_weights_dhw_5layer_1k_pool.npz) of pre-trained chromatin feature model for seeding human deepC runs in transfer learning mode


* [summary table](http://userweb.molbiol.ox.ac.uk/public/rschwess/deepC/data_links/table_deletion_screen_gm12878_sorted_for_suppl.txt) of *in situ* GM12878 CTCF and open chromatin deletion screen
* [summary table](http://userweb.molbiol.ox.ac.uk/datashare/rschwess/deepC/data_links/table_deletion_screen_gm12878_sorted_for_suppl.txt) of *in situ* GM12878 CTCF and open chromatin deletion screen

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