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Issues list

Search behavior on obo files not as expected bug Something isn't working
#88 opened Jun 2, 2022 by deepakunni3
1
Add example of how to do gene set enrichment documentation Improvements or additions to documentation
#32 opened Apr 20, 2022 by cmungall
@realmarcin
Write a complete tutorial documentation Improvements or additions to documentation
#33 opened Apr 20, 2022 by cmungall 1.0.0
remove print statements in tests good first issue Good for newcomers
#37 opened Apr 25, 2022 by cmungall
Support for reasoning enhancement New feature or request
#38 opened Apr 25, 2022 by cmungall 1.0.0
2
Add a generate-categories method enhancement New feature or request
#41 opened Apr 26, 2022 by cmungall
@sierra-moxon
2
actions take too long repo-hygeine Internal organization of repo, layout, github actions, presence of metadata, developer docs
#44 opened Apr 28, 2022 by cmungall
@sujaypatil96
reinstate wikidata tests and ensure wikidata querying respects limis repo-hygeine Internal organization of repo, layout, github actions, presence of metadata, developer docs
#46 opened Apr 28, 2022 by cmungall
review cross-ontology-diff datamodel prior to implementing design
#61 opened May 4, 2022 by cmungall
@matentzn @pkalita-lbl
4
Align metrics with robot measure? design
#68 opened May 5, 2022 by matentzn
1
set_label_for_curie not implemented for owl files? bug Something isn't working
#73 opened May 11, 2022 by realmarcin
High-level interface via the Bioregistry design
#74 opened May 12, 2022 by cthoyt
2
Finalize naming conventions and method signatures for all interfaces design
#30 opened Apr 20, 2022 by cmungall 1.0.0
Test with sssom schema repo-hygeine Internal organization of repo, layout, github actions, presence of metadata, developer docs
#82 opened May 24, 2022 by cmungall
@hrshdhgd
2
add version introspection enhancement New feature or request
#94 opened Jun 9, 2022 by cmungall
1
is there documentation on the search stuff (eg t~ etc.)? workshop issues from oakworkshop
#104 opened Jun 15, 2022 by cmungall
On fetching ancestors — is this stated or reasoned? Does the query invoke the reasoner or are we assuming pre-classified? workshop issues from oakworkshop
#105 opened Jun 15, 2022 by cmungall
Can you tell viz to include a legend? enhancement New feature or request workshop issues from oakworkshop
#107 opened Jun 15, 2022 by cmungall
consider adding list of ontologies for annotate subcommand workshop issues from oakworkshop
#108 opened Jun 15, 2022 by cmungall
consider pystow for API keys workshop issues from oakworkshop
#110 opened Jun 15, 2022 by cmungall
Create table of implementation x interface/method workshop issues from oakworkshop
#112 opened Jun 15, 2022 by cmungall
Document outputs more in tutorial workshop issues from oakworkshop
#113 opened Jun 15, 2022 by cmungall
And SOP to PRs workshop issues from oakworkshop
#114 opened Jun 15, 2022 by cmungall 1.0.0
1
ensure CLI and interfaces are closely aligned design workshop issues from oakworkshop
#115 opened Jun 15, 2022 by cmungall
1
Update docs on pystow/sqlite cache management
#823 opened Dec 10, 2024 by cmungall
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