happyCompare v1.1.0

Core functionality

• Updated read_samplesheet to support custom metrics on top of hap.py results. See package vignettes for usage details.
• Evaluate differences in stratified counts across groups with compare_hdi.
• Updated estimate_hdi to issue warnings if subset lists are not consistent across replicates and groups.
• Streamlined data dependencies: test data available under tests/data, vignettes data available under vignettes.

happyCompare v1.0

Core functionality

• Import annotated hap.py results with read_samplesheet
• Access metrics and samplesheet metadata with extract_metrics
• Quantify uncertainty in stratified counts from hap.py with estimate_hdi

Reporting modules

• Obtain a tabular summary of performance metrics with hc_summarise_metrics
• Quickly generate ROC curves with hc_plot_roc
• Plot HDI estimates for a given subset with hc_plot_hdi