Tools to process and analyze deep sequencing data.

ChIP-seq analysis pipeline

ENCODE ChIP-seq pipeline

📈SeqPlots - An interactive tool for visualizing NGS signals and sequence motif densities along genomic features using average plots and heatmaps.

Interactively explore metagenomes and more from a web browser.

Backend Server for CIViC Project

Democratizing Deep-Learning for Drug Discovery, Quantum Chemistry, Materials Science and Biology

Dude database cleanup script

This repository contains the code related to Natural Language Processing using python scripting language. All the codes are related to my book entitled "Python Natural Language Processing"

Notebooks for learning deep learning

MIMIC Code Repository: Code shared by the research community for the MIMIC family of databases

Count bases in BAM/CRAM files

Haplotype VCF comparison tools

A comprehensive update to the PLINK association analysis toolset. Beta testing of the first new version (1.90), focused on speed and memory efficiency improvements, is finishing up. Development is …

Official git repository for Biopython (originally converted from CVS)

ATLAS is an open source software tool for researchers to conduct scientific analyses on standardized observational data

Application for Epidemiological Geographic Information System (AEGIS): a system for semi-automatic GIS visualization based on the OMOP Common Data Model.

OMOP-CDM Extension for genomic data

An implementation of RetainVis: Visual Analytics with Interpretable and Interactive Recurrent Neural Networks on Electronic Medical Records

The Genome Analysis Tutorial Page.

BSMS205 Genetics

Flask로 개발하는 게시판 기반의 한국형 SNS

Jupyter notebooks for learning how to use SimpleITK

With Holoviews, your data visualizes itself.

『파이썬 웹 프로그래밍 : 플라스크를 이용한 쉽고 빠른 웹 개발』 예제 코드

🦷 Automatic segmentation of the 8 incisors in panoramic dental radiographs using a model based approach.