repository used to add a README.md to the GitHub profile

✍ A collection of options to spice up your README's.

MFannot is a program for the annotation of mitochondrial and plastid genomes

An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.

Variant filtering between sets of samples

ctDNA Analysis pipeline. Version 1.0.0

iSofOrmS annoTAtoR pipeline Aucouturier, C., Soirat, N., Castéra, L. et al. Fine mapping of RNA isoform diversity using an innovative targeted long-read RNA sequencing protocol with novel dedicated…

Approximate nearest neighbour search for microbial genomes based on hash metric

Improvement of Long Read Assemblies (ILRA) is a pipeline to help in the post assembly process (finishing) by cleaning and merging contigs, correct homopolymer tracks and circulate plastids. We also…

Sam's Notebook

Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease

Params validation plugin for Nextflow pipelines

Webserver and command line tool for annotating engineered plasmids

Nextflow runs monitoring and organisation UI

An experimental package for phylogenetics in Julia

simuG: a general-purpose genome simulator

Example of daisy chaining nextflow pipeline with the AliNe pipeline

Pipeline for the determination of a proxy of risk of environmental enrichment for a given emerging AMR gene and/or bacteria

NBIS Summer School • Advanced R for Bioinformatics

LucaProt: A novel deep learning framework that incorporates protein amino acid sequence and structural information to predict protein function.

A proof of concept daisy-chaining Nextflow workflows

A Nextflow pipeline for running synteny analysis.

This is the fork for nextflow pipeline version.

A pipeline for taxonomic classification and functional annotation of metagenomic reads. Based on MEDUSA

RADO (Réseau d’Analyse de DOnnées) interactive member info page https://Juke34.github.io/RADO_members/

Un site web dédié à la bioinformatique où je centralise mes connaissances, tutoriels et ressources pour faciliter l'apprentissage et le travail en analyse de données biologiques.

Posit Cheat Sheets - Can also be found at https://posit.co/resources/cheatsheets/.