awesome-protein-paper-with-code (Wip)

😎 An awesome & curated list of paper-with-code for Protein Deep Learning

Language-Pretrain

Mut-effects

Year 2023

1. [ICIKM] Geometric Graph Learning for Protein Mutation Effect Prediction [code] [paper] Tencent AI Lab

PPI

1. GeoPPI

• https://github.com/ddofer/ProFET

• https://github.com/FowlerLab/Envision2017

• https://github.com/tommyhuangthu/EvoEF2

• https://github.com/

• https://github.com/microsoft/foldingdiff | [Colab] [HuggingFace]

1. [Arxiv] SE(3) diffusion model with application to protein backbone generation [se3_diffusion] [Colab]

• Pretrained protein backbone diffusion: [RFdiffusion]
• Protein-ligand docking: [DiffDock] [DiffDock-Pocket]
• Protein torsion angles: [FoldingDiff]
• Protein CA backbone generation: [ProtDiff/SMCDiff]