A clean documentation and blog theme for your Hugo site based on Bootstrap 5

A newly developed metabolic modeling pipeline, SuperCC, which could simulate the performances of different microbiomes.

A tutorial for pathway visualization using tidyverse, igraph, and ggraph

Create Voronoi and Sunburst Treemaps from Hierarchical data

FastMM: an ultra-efficient toolbox for constraint-based metabolic modeling

Fast Flux Variability Analysis

A website displaying hundreds of charts made with Python

Approaching (Almost) Any Machine Learning Problem

This repository contains the supplementary material associated with my book: Essential Math for AI published by O'Reilly Media

Deep learning and Bayesian approach applied to enzyme turnover number for the improvement of enzyme-constrained genome-scale metabolic models (ecGEMs) reconstruction

Creating composite plot using 'aplot'

The RAVEN Toolbox for genome scale model reconstruction, curation and analysis.

Content of a metabolic modeling course based on the Matlab version of COBRA