notebooks

List of notebooks for users

Instruction for users

TBD

Instructions for developers

To recover notebook, runs following commands

 $ python before_and_after_github_script.py -b

and before pushing to repository

$ python before_and_after_github_script.py -a

This will reset all the notebooks (clear output)

To turn debugging mode on, add the flag -d (--use_debugging_mode) to the command

$ python before_and_after_github_script.py -a -d

Name		Name	Last commit message	Last commit date
Latest commit History 1,511 Commits
Personalized_notebooks		Personalized_notebooks
__code		__code
__docs		__docs
converted_notebooks		converted_notebooks
tests		tests
ui		ui
.build_new_environment.sh		.build_new_environment.sh
.calculate_water_intake_profile.ipynb		.calculate_water_intake_profile.ipynb
.gitignore		.gitignore
.normalization.ipynb		.normalization.ipynb
.normalization_by_range_of_images_NO_GUIDE.ipynb		.normalization_by_range_of_images_NO_GUIDE.ipynb
.pre_commit.py		.pre_commit.py
.profile_vs_file_index_PROTOTYPE.ipynb		.profile_vs_file_index_PROTOTYPE.ipynb
DEBUGGING_normalization.ipynb		DEBUGGING_normalization.ipynb
Frederick_ipts.ipynb		Frederick_ipts.ipynb
README.md		README.md
TESTING_images_and_metadata_extrapolation_matcher.ipynb		TESTING_images_and_metadata_extrapolation_matcher.ipynb
TEST__registration.ipynb		TEST__registration.ipynb
TEST_addie_table.ipynb		TEST_addie_table.ipynb
TEST_cylindrical_geometry_correction.ipynb		TEST_cylindrical_geometry_correction.ipynb
TEST_figuring_out_how_to_control_size_of_pyqtgraph.ipynb		TEST_figuring_out_how_to_control_size_of_pyqtgraph.ipynb
TEST_metadata_ascii_parser_IPTS_20444.ipynb		TEST_metadata_ascii_parser_IPTS_20444.ipynb
TEST_metadata_overlapping_images.ipynb		TEST_metadata_overlapping_images.ipynb
TEST_profile.ipynb		TEST_profile.ipynb
TEST_radial_profile.ipynb		TEST_radial_profile.ipynb
TEST_scale_overlapping_images.ipynb		TEST_scale_overlapping_images.ipynb
TEST_time_stamp.ipynb		TEST_time_stamp.ipynb
TEST_water_intake_profile_calculator.ipynb		TEST_water_intake_profile_calculator.ipynb
TOPAZ_config_generator.ipynb		TOPAZ_config_generator.ipynb
before_and_after_github_script.py		before_and_after_github_script.py
bin_images.ipynb		bin_images.ipynb
bragg_edge_normalization.ipynb		bragg_edge_normalization.ipynb
bragg_edge_peak_fitting.ipynb		bragg_edge_peak_fitting.ipynb
bragg_edge_profile.ipynb		bragg_edge_profile.ipynb
bragg_edge_sample_and_powder.ipynb		bragg_edge_sample_and_powder.ipynb
bragg_edge_signal_vs_powder_peaks.ipynb		bragg_edge_signal_vs_powder_peaks.ipynb
bragg_edge_tof_to_lambda_conversion.ipynb		bragg_edge_tof_to_lambda_conversion.ipynb
calibrated_transmission.ipynb		calibrated_transmission.ipynb
combine_all_images_selected.ipynb		combine_all_images_selected.ipynb
combine_folders.ipynb		combine_folders.ipynb
combine_images_n_by_n.ipynb		combine_images_n_by_n.ipynb
combine_images_without_outliers.ipynb		combine_images_without_outliers.ipynb
create_list_of_file_name_vs_time_stamp.ipynb		create_list_of_file_name_vs_time_stamp.ipynb
cylindrical_geometry_correction.ipynb		cylindrical_geometry_correction.ipynb
deal_images.ipynb		deal_images.ipynb
display_and_export_images_with_metadata_profile.ipynb		display_and_export_images_with_metadata_profile.ipynb
display_and_export_images_with_timestamp.ipynb		display_and_export_images_with_timestamp.ipynb
display_counts_of_region_vs_stack.ipynb		display_counts_of_region_vs_stack.ipynb
display_file_names_vs_time_stamp.ipynb		display_file_names_vs_time_stamp.ipynb
display_integrated_stack_of_images.ipynb		display_integrated_stack_of_images.ipynb
dual_energy.ipynb		dual_energy.ipynb
extract_evenly_spaced_files.ipynb		extract_evenly_spaced_files.ipynb
extract_nexus_daslogs.ipynb		extract_nexus_daslogs.ipynb
extract_sans_reductionlog_metadata.ipynb		extract_sans_reductionlog_metadata.ipynb
file_name_and_metadata_vs_time_stamp.ipynb		file_name_and_metadata_vs_time_stamp.ipynb
filename_metadata_match.ipynb		filename_metadata_match.ipynb
fix_images.ipynb		fix_images.ipynb
fix_images_with_negative_pixels.ipynb		fix_images_with_negative_pixels.ipynb
from_attenuation_to_concentration.ipynb		from_attenuation_to_concentration.ipynb
from_dsc_time_info_to_ascii_file_vs_time.ipynb		from_dsc_time_info_to_ascii_file_vs_time.ipynb
gamma_filtering_tool.ipynb		gamma_filtering_tool.ipynb
images_and_metadata_extrapolation_matcher.ipynb		images_and_metadata_extrapolation_matcher.ipynb
install_check.py		install_check.py
integrated_roi_counts_vs_file_name_and_time_stamp.ipynb		integrated_roi_counts_vs_file_name_and_time_stamp.ipynb
list_element_bragg_edges.ipynb		list_element_bragg_edges.ipynb
list_metadata_and_time_with_oncat.ipynb		list_metadata_and_time_with_oncat.ipynb
list_tiff_metadata.ipynb		list_tiff_metadata.ipynb
math_images.ipynb		math_images.ipynb
metadata_ascii_parser.ipynb		metadata_ascii_parser.ipynb
metadata_overlapping_images.ipynb		metadata_overlapping_images.ipynb
normalization.ipynb		normalization.ipynb
normalization_batch.ipynb		normalization_batch.ipynb
normalization_with_simplify_selection.ipynb		normalization_with_simplify_selection.ipynb
panoramic_stitching.ipynb		panoramic_stitching.ipynb
profile.ipynb		profile.ipynb
radial_profile.ipynb		radial_profile.ipynb
registration.ipynb		registration.ipynb
rename_files.ipynb		rename_files.ipynb
requirements.txt		requirements.txt
requirements.yml		requirements.yml
resonance_imaging_experiment_vs_theory.ipynb		resonance_imaging_experiment_vs_theory.ipynb
rotate_and_crop_images.ipynb		rotate_and_crop_images.ipynb
scale_overlapping_images.ipynb		scale_overlapping_images.ipynb
sequential_combine_images_using_metadata.ipynb		sequential_combine_images_using_metadata.ipynb
shifting_time_offset.ipynb		shifting_time_offset.ipynb
template_ui.ipynb		template_ui.ipynb
water_intake_profile_calculator.ipynb		water_intake_profile_calculator.ipynb

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