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Commits on Aug 30, 2022

• export graph as graphml

  KijinKims

  committed
  27ac83d

Commits on Jun 27, 2022

• graph identifier as strict digraph in place of digraph

  KijinKims

  committed
  5560208

Commits on Feb 26, 2022

• graph export updated

  KijinKims

  committed
  4267b66

Commits on Nov 2, 2021

• graph export completed

  KijinKims

  committed
  d266c79

Commits on Oct 31, 2021

• bug fixed

  KijinKims

  committed
  c385f62

• comment tigID write

  KijinKims

  committed
  3ad0beb

• comment tigID write

  KijinKims

  committed
  6e588b5

• bug fixed

  KijinKims

  committed
  4312a9e

• bug fixed

  KijinKims

  committed
  4574d02

• bug fixed

  KijinKims

  committed
  c9fd747

• bgl adjacency_list_io not used anymore

  KijinKims

  committed
  d09ab2b

• commit for test

  KijinKims

  committed
  963c486

• minor bug fixed

  KijinKims

  committed
  a458a88

• fixed to make use of BGL adjacency list io module

  KijinKims

  committed
  56ef125

• modified to export DAGs which were discarded originally

  KijinKims

  committed
  30b6663

Commits on Oct 18, 2021

• Guard against OG == nullptr when called from layoutReads.

  brianwalenz

  committed
  08b0347

Commits on Oct 8, 2021

• Fix invalid load check

  skoren

  committed
  1c62138

Commits on Oct 1, 2021

• Fix runs with <100 reads (marbl#2035)

  skoren

  committed
  7fb66bb

Commits on Sep 16, 2021

• Add .ovb as an input type; allow filtering of imported overlaps. Issue marbl#2022.

  brianwalenz

  committed
  4702e33

Commits on Sep 7, 2021

• Fix usage text. @fishercera marbl#686

  brianwalenz

  committed
  407ae11

Commits on Aug 26, 2021

• Revert IND constants changed in cb94432.

  brianwalenz

  committed
  6c41938

• Add license text.

  brianwalenz

  committed
  79f0cbd

Commits on Aug 13, 2021

• Rewrite correction memory configuration.

  brianwalenz

  committed
  dee8c6e

• Indent creation of correctReads.sh,

  brianwalenz

  committed
  5983fc3

• Simplify call to getAllowedResources().

  brianwalenz

  committed
  806081d

• Tidy up cor and cns settings.

  brianwalenz

  committed
  7332aec

Commits on Aug 4, 2021

• Autoset read correction memory

  skoren

  committed
  27e2db7

Commits on Aug 3, 2021

• Trim back noisy alignments to the real alignment.

  brianwalenz

  committed
  ea2b03d

• Change default corErrorRate from 50 to 30 (nanopore) and 30 to 25 (pacbio).

  brianwalenz

  committed
  741911c

• Extend so it will report time on arbitrary jobs.

  brianwalenz

  committed
  0e603ad

Commits on Aug 2, 2021

• Fix/simplify setting of thread limit.

  brianwalenz

  committed
  b626dbe

• Fix issues with invalid SGE date/time strings.

  brianwalenz

  committed
  0f1c290

• Fix minor error in comment.

  brianwalenz

  committed
  f9861a4

Commits on Jul 29, 2021

• Remove obsolete analyzeBest.

  brianwalenz

  committed
  9f3aaf4

• Disable symmetrizeOverlaps() for layoutReads.

  brianwalenz

  committed
  1591829

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