A number of functions were generated to perform pan-cancer DEG analysis, correlation analysis between gene expression and TMB, MSI, TIME, and promoter methylation. Methods for visualization were pr…

Workflow for preprocessing cfDNA samples.

cfDNApipe: A comprehensive quality control and analysis pipeline for cell-free DNA high-throughput sequencing data

cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis

Code to reproduce "Detecting liver cancer using cell-free DNA fragmentomes