Tools to make an R developer's life easier

Make Complex Heatmaps

🎄Visualization and annotation of phylogenetic trees

📊 Circular and Rectangular Manhattan Plot

➡️️➡️️⬅️️➡️️ Draw gene arrow maps in ggplot2

Inferring and visualizing clonal evolution in multi-sample cancer sequencing

Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.

Transcript quantification import for modular pipelines

Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer

Automatic DNA methylation detection from nanopore tools and their consensus model

An R package to time somatic mutations

Efficient manipulation of biological strings

Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes

Code and custom scripts relevant to gnomAD-SV (Collins*, Brand*, et al., 2020)

R package to create manhattan plots using ggplot

Saluki, a method to predict mRNA half-lives from sequence

Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility

Methods and analysis for Garcia-Nieto, et al. Somatic mutations

REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability

A flexible R function for comparing response proportions in sequencing count data

An R package of useful functions to process and analyze Strand-seq data.

Insertion identification for the pan-genome human reference

Upload code for SV manuscript

❗ This is a read-only mirror of the CRAN R package repository. RNAsmc — RNA Secondary Structure Module Mining, Comparison and Plotting