Stars
🎄Visualization and annotation of phylogenetic trees
Inferring and visualizing clonal evolution in multi-sample cancer sequencing
Algorithm to implement Fraction and Copy number Estimate from Tumor/normal Sequencing.
Transcript quantification import for modular pipelines
Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer
Automatic DNA methylation detection from nanopore tools and their consensus model
Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes
Saluki, a method to predict mRNA half-lives from sequence
Analysis and figure generation code for the ABRF NGS Phase II Study on DNA-seq reproducibility
Methods and analysis for Garcia-Nieto, et al. Somatic mutations
REMoving Bias from Rna-seq ANalysis of Differential Transcript Stability
A flexible R function for comparing response proportions in sequencing count data
An R package of useful functions to process and analyze Strand-seq data.
Insertion identification for the pan-genome human reference
❗ This is a read-only mirror of the CRAN R package repository. RNAsmc — RNA Secondary Structure Module Mining, Comparison and Plotting