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@KrishnaswamyLab

Krishnaswamy Lab

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  1. PHATE PHATE Public

    PHATE (Potential of Heat-diffusion for Affinity-based Transition Embedding) is a tool for visualizing high dimensional data.

    Python 482 76

  2. MAGIC MAGIC Public

    MAGIC (Markov Affinity-based Graph Imputation of Cells), is a method for imputing missing values restoring structure of large biological datasets.

    Jupyter Notebook 348 95

  3. SAUCIE SAUCIE Public

    Python 98 29

  4. MELD MELD Public

    Quantifying experimental perturbations at single cell resolution

    Python 106 9

  5. Multiscale_PHATE Multiscale_PHATE Public

    Creating multi-resolution embeddings and clusters from high dimensional data

    Jupyter Notebook 49 11

  6. TrajectoryNet TrajectoryNet Public

    TrajectoryNet: A Dynamic Optimal Transport Network for Modeling Cellular Dynamics

    Jupyter Notebook 103 15

Repositories

Showing 10 of 81 repositories
  • krishnaswamy-lab-site Public
    KrishnaswamyLab/krishnaswamy-lab-site’s past year of commit activity
    Svelte 1 0 0 0 Updated Dec 24, 2024
  • DiffKillR Public

    [ICASSP 2025] DiffKillR: Killing and Recreating Diffeomorphisms for Cell Annotation in Dense Microscopy Images

    KrishnaswamyLab/DiffKillR’s past year of commit activity
    Python 3 0 1 0 Updated Dec 21, 2024
  • ImageFlowNet Public

    [ICASSP 2025] ImageFlowNet: Forecasting Multiscale Image-Level Trajectories of Disease Progression with Irregularly-Sampled Longitudinal Medical Images

    KrishnaswamyLab/ImageFlowNet’s past year of commit activity
    Python 9 0 0 0 Updated Dec 21, 2024
  • MIOFlow_conditional Public Forked from KrishnaswamyLab/MIOFlow
    KrishnaswamyLab/MIOFlow_conditional’s past year of commit activity
    Jupyter Notebook 0 4 0 0 Updated Dec 13, 2024
  • PointCloudNet Public
    KrishnaswamyLab/PointCloudNet’s past year of commit activity
    Jupyter Notebook 1 1 0 0 Updated Dec 12, 2024
  • Beta-Cell-Driven-PDAC Public

    Codebase for "Beta cells are essential drivers of pancreatic ductal adenocarcinoma development"

    KrishnaswamyLab/Beta-Cell-Driven-PDAC’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Dec 4, 2024
  • DiffusionEMD Public

    Code corresponding to the paper Diffusion Earth Mover's Distance and Distribution Embeddings

    KrishnaswamyLab/DiffusionEMD’s past year of commit activity
    Jupyter Notebook 35 7 2 0 Updated Nov 29, 2024
  • MIOFlow_growth_rate Public Forked from KrishnaswamyLab/MIOFlow
    KrishnaswamyLab/MIOFlow_growth_rate’s past year of commit activity
    Jupyter Notebook 0 4 0 0 Updated Nov 22, 2024
  • AAnet Public

    Archetypal Analysis network (AAnet)

    KrishnaswamyLab/AAnet’s past year of commit activity
    Jupyter Notebook 31 9 2 1 Updated Oct 30, 2024
  • neural-PRISM Public

    Multimodal latent trajectories of brain dynamics

    KrishnaswamyLab/neural-PRISM’s past year of commit activity
    0 0 0 0 Updated Oct 28, 2024
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