UCSC Genome Browser source tree. Stable branch: "beta".

VCF visualization interface

VarFish: comprehensive DNA variant analysis for diagnostics and research

SNAPPY Nucleic Acid Processing in Python

Aggregate results from bioinformatics analyses across many samples into a single report.

TransVar - multiway annotator for precision medicine

RNA-seq aligner

Python logging made (stupidly) simple

DO NOT FORK, CLICK ON "Use this template" - A github template to start a Python Project - this uses github actions to generate your project based on the template.

🙌 OpenHands: Code Less, Make More

The official Meta Llama 3 GitHub site

✂️ Deep learning-based splice site predictor that improves spliced alignments

web search done right

Linux kernel source tree

ASimulatoR: splice-aware RNA-seq data simulation https://doi.org/10.1093/bioinformatics/btab142

Guide your users through a tour of your app

Cyberduck is a libre FTP, SFTP, WebDAV, Amazon S3, Backblaze B2, Microsoft Azure & OneDrive and OpenStack Swift file transfer client for Mac and Windows.

YAML template engine

A tool to create visual HTML reports from collections of CSV/TSV tables

Integrate DNA-seq and RNA-seq data to identify mutations that are associated with regulatory effects on gene expression.

The second version of the Kraken taxonomic sequence classification system

Home of Techlore - digital rights for all

software version control visualization

This is the development home of the Snakemake wrapper repository, see

Improve the readability of R code with the pipe

Interactive network visualization in Python and Dash, powered by Cytoscape.js

Documentation for GitHub Copilot

This is the development home of the workflow management system Snakemake. For general information, see

The Web framework for perfectionists with deadlines.

Modern and easy to use SQL client for MySQL, Postgres, SQLite, SQL Server, and more. Linux, MacOS, and Windows.