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Add note about parameter/preset compatibility
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gahdritz authored Jul 21, 2022
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Expand Up @@ -159,8 +159,9 @@ respectively. For a breakdown of the differences between the different parameter
files, see the README downloaded to `openfold/resources/openfold_params/`. Since
OpenFold was trained under a newer training schedule than the one from which the
`model_n` config presets are derived, there is no clean correspondence between
`config_preset` settings and OpenFold checkpoints; the only restraint is that `*_ptm`
checkpoints must be run with `*_ptm` config presets.
`config_preset` settings and OpenFold checkpoints; the only restraints are that
`*_ptm` checkpoints must be run with `*_ptm` config presets and that `_no_templ_`
checkpoints are only compatible with template-less presets (`model_3` and above).

Note that chunking (as defined in section 1.11.8 of the AlphaFold 2 supplement)
is enabled by default in inference mode. To disable it, set `globals.chunk_size`
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