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KGWAS: novel genetics discovery enabled by massive functional genomics knowledge graph

Colocalization for the HLA region

xQTLbiolinks: an R package for integrative analysis with xQTL data

UKB RAP Notebooks contains a collection of examples of how to use UK Biobank Research Analyses Platform (RAP).

Analyses conducting GWAS across the UKBB diverse superpopulations

Public Resources from the Mental Health Research Network

A Python package for creating high-quality manhattan and Q-Q plots from GWAS results.

Overview of the data QC, code, and GWAS summary output from the 2017 UK Biobank data release

A demo/example pipeline for analysing wearables data using the RAP.

Quality control, annotation, association test, and post analysis

Workbench demo project: cross-analysis of AoU and UKB.

merge two genotype datasets in PLINK format

A GPU version of SAIGE for full GRM GWAS analysis

Prepare electronic medical record data from the UK Biobank for time-to-event analyses

A fast, scalable, and accurate local ancestry method.

Hail batch pipeline and scripts for local ancestry inference

WEScall: WES genotype calling pipeline

Provides helper scripts for inferring local ancestry, performing ancestry-specific PCA, etc

The Polygenic Score Catalog Calculator is a nextflow pipeline for polygenic score calculation

WDL Analysis Research Pipelines

Reproducible Medical Research with R

An R package to manipulate and explore UK Biobank data

Prepare UK Biobank Electronic Health Record data for research