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1. scib scib Public

   Forked from theislab/scib

   Benchmarking analysis of data integration tools

   Python

2. scib-reproducibility scib-reproducibility Public

   Forked from theislab/scib-reproducibility

   Additional code and analysis from the single-cell integration benchmarking project

   Jupyter Notebook

3. scib-pipeline scib-pipeline Public

   Forked from theislab/scib-pipeline

   Snakemake pipeline that works with the scIB package to benchmark data integration methods.

   Python

4. sanbomics_scripts sanbomics_scripts Public

   Forked from mousepixels/sanbomics_scripts

   scripts and notebooks from sanbomics

   Jupyter Notebook

5. single-cell-tutorial single-cell-tutorial Public

   Forked from theislab/single-cell-tutorial

   Single cell current best practices tutorial case study for the paper:Luecken and Theis, "Current best practices in single-cell RNA-seq analysis: a tutorial"

   Jupyter Notebook

6. single-cell-best-practices single-cell-best-practices Public

   Forked from theislab/single-cell-best-practices

   https://www.sc-best-practices.org

   Jupyter Notebook