Microsoft Genomics implementation of the Broad Institute's Cromwell workflow engine on Azure

Jupyter Notebooks on Azure for Genomics Data Analysis

Firefly III: a personal finances manager

Using TCR and expression for sequence embedding

A toolkit for single-cell immune profiling

Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data

A few exercises for use at events.

Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

Distributional normalization (Dino) method for correcting depth effects in RNAseq data

Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)

Scripts to reproduce the analysis of the MAESTER paper (https://www.nature.com/articles/s41587-022-01210-8).

Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)

Deep probabilistic analysis of single-cell and spatial omics data

Clonotype Neighbor Graph Analysis

Identification and quantification of Seq-Well TCR transcripts and their recovered CDR3 sequences.

Assessing the impact of Airbnb on housing dynamics with k-nearest neighbours

SingleCellNet: classify single cells across species and platforms

Code and data used in The Great Repertoire Project

MIT Deep Learning Book in PDF format (complete and parts) by Ian Goodfellow, Yoshua Bengio and Aaron Courville

R toolkit for single cell genomics

A RepSeq processing swiss-knife