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@MouseLand

MouseLand

collaborative analysis of neural recordings

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  1. cellpose cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Jupyter Notebook 1.6k 447

  2. Kilosort Kilosort Public

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  3. suite2p suite2p Public

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  4. rastermap rastermap Public

    a visualization method for neural data

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  5. facemap facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

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  6. stringer-pachitariu-et-al-2018b stringer-pachitariu-et-al-2018b Public

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Repositories

Showing 10 of 21 repositories
  • Kilosort Public

    Fast spike sorting with drift correction

    Python 522 GPL-3.0 263 21 1 Updated Apr 25, 2025
  • cellpose Public

    a generalist algorithm for cellular segmentation with human-in-the-loop capabilities

    Jupyter Notebook 1,580 BSD-3-Clause 447 46 (2 issues need help) 10 Updated Apr 22, 2025
  • MouseLand.github.io Public

    website for Pachitariu-Stringer lab

    CSS 0 0 0 0 Updated Apr 22, 2025
  • facemap Public

    Framework for predicting neural activity from mouse orofacial movements tracked using a pose estimation model. Package also includes singular value decomposition (SVD) of behavioral videos.

    Python 165 GPL-3.0 63 12 1 Updated Apr 4, 2025
  • neuropop Public

    analysis tools for large-scale neural recordings

    Python 14 GPL-3.0 2 0 0 Updated Apr 4, 2025
  • rastermap Public

    a visualization method for neural data

    Python 222 GPL-3.0 50 8 0 Updated Apr 4, 2025
  • suite2p Public

    cell detection in calcium imaging recordings

    Jupyter Notebook 378 GPL-3.0 252 113 (1 issue needs help) 12 Updated Apr 4, 2025
  • critical_init Public

    code for Pachitariu et al 2025

    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Feb 28, 2025
  • cellpose-napari Public

    napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool

    Python 52 BSD-3-Clause 24 10 2 Updated Oct 27, 2024
  • Jupyter Notebook 3 GPL-3.0 1 0 0 Updated Aug 27, 2024