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Modeling and predicting single-cell multi-gene perturbation responses with scLAMBDA

Python 10 4 Updated Jan 14, 2025

reticulate-free single cell format conversion

R 134 8 Updated Dec 6, 2024

pySCENIC is a lightning-fast python implementation of the SCENIC pipeline (Single-Cell rEgulatory Network Inference and Clustering) which enables biologists to infer transcription factors, gene reg…

Python 488 186 Updated Apr 8, 2024

Make TCGA download and prepare easy!

R 124 17 Updated Apr 30, 2024

MetaTiME: Meta-components in Tumor immune MicroEnvironment

Python 137 5 Updated Aug 11, 2023

Enhanced ChatGPT Clone: Features Agents, DeepSeek, Anthropic, AWS, OpenAI, Assistants API, Azure, Groq, o1, GPT-4o, Mistral, OpenRouter, Vertex AI, Gemini, Artifacts, AI model switching, message se…

TypeScript 23,778 3,981 Updated Mar 27, 2025

AUCell: score single cells with gene regulatory networks

R 148 28 Updated Mar 9, 2024

CytoSPACE: Optimal mapping of scRNA-seq data to spatial transcriptomics data

Python 124 18 Updated Feb 20, 2025

R package for analyzing and interactively exploring large-scale single-cell RNA-seq datasets

JavaScript 223 47 Updated Feb 27, 2024

Title: Identification of pre-exhaustion CD8+ T cell subpopulation and core genes as key role in T cell exhaustion by dynamic network biomarker

R 5 2 Updated Mar 24, 2021

Identify the critical points and factors

R 7 5 Updated Apr 7, 2024

STREAM: Single-cell Trajectories Reconstruction, Exploration And Mapping of single-cell data

Jupyter Notebook 174 50 Updated Dec 18, 2021

BioTIP: Biological Tipping-Point Identification and Characterization

HTML 18 5 Updated Dec 26, 2024

A well-designed cross-platform ChatGPT UI (Web / PWA / Linux / Win / MacOS). 一键拥有你自己的跨平台 ChatGPT 应用。

TypeScript 1 Updated Aug 20, 2023

Automatic Annotation on Cell Types of Clusters from Single-Cell RNA Sequencing Data

R 226 37 Updated May 8, 2023