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sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.

C++ 44 8 Updated Jan 29, 2015

This Python function dm_test implements the Diebold-Mariano Test (1995) to statistically test forecast accuracy equivalence for 2 sets of predictions with modification suggested by Harvey et. al (1…

Python 113 35 Updated Dec 7, 2017

MAFcounter is a multi-threaded K-MER frequency counting program designed to work on multiple sequence alignment files

C++ 3 Updated Nov 28, 2024

CLI tool to process and analyze MAF files ( Multiple alignment format )

Python 4 Updated Jan 20, 2025

Bioinformatics CLI tool to extract potential Z-DNA forming sequences from fasta files

Python 3 Updated Nov 13, 2024

Calculating fractal dimensions with box-counting

Python 27 5 Updated Dec 18, 2020

The complete sequence of a human genome

937 99 Updated Nov 19, 2024

Identify non-B forming motifs

C 8 6 Updated Aug 22, 2023

RPTRF: A Rapid Perfect Tandem Repeat Finder Tool for DNA Sequences

C++ 7 1 Updated Sep 7, 2023

Bash script to download/update snapshots of files from NCBI genomes repository (refseq/genbank) with track of changes and without redundancy

Shell 149 15 Updated Dec 15, 2024

G4Hunter (2012_2015)- IECB - Bordeaux

Python 13 10 Updated Apr 7, 2020

It's that time of the year!

Jupyter Notebook 3 Updated Jan 13, 2024

Making the popular Tic Tac Toe game using only the cmd console interface and c#!

C# 2 1 Updated Jul 2, 2019

"Cyberpunk style" for matplotlib plots

Python 1,727 73 Updated Nov 28, 2024

Setup instructions for Le Wagon's students on their first day of Data Science Bootcamp

Ruby 1,846 516 Updated Jan 24, 2025

Default configuration for Le Wagon's students

Shell 20,961 26,734 Updated Aug 29, 2024