Minor allele Frequency considering only homozygous sites and Heterozygousity filtering How to run: python HomoMAFfiltering.py pathtovcf pathtofilteredvcf mafthreshold heterozygousitythreshold e.g. python HomoMAFfiltering.py /work/schnablelab/nikees/SAP_imputed.vcf /work/schnablelab/nikees/SAP_imputed_filtered.vcf 0.05 0.05