v0.1.5.4

What's Changed

• Merge changes from master by @mdshw5 in #32
• Update GTF tag handling by @mdshw5 in #33

Full Changelog: v0.1.5.3...v0.1.5.4

v0.1.5.3

What's Changed

• Add dockerfile and ignore development files by @mdshw5 in #29

Full Changelog: v0.1.5.2...v0.1.5.3

v0.1.5.2

What's Changed

• Fix the genotyping process to work with gzipped input files by @mdshw5 in #28

Full Changelog: v0.1.5.1...v0.1.5.2

v0.1.5.1

• Closes #24 and fixes all known issues related to processing an experiment with only one sample

Full Changelog: v0.1.5...v0.1.5.1

v0.1.5

What's Changed

• Add user defined GTF tag names, default disable_infer_features by @mdshw5 in #26

Full Changelog: v0.1.4...v0.1.5

v0.1.4.4

What's Changed

• Add gene-level effective lengths (#6) by @mdshw5 in #22
• Fix gene-level lengths output by @mdshw5 in #23
• Fixes auto sample naming by @ucpete in #21
• Don't drop dimensions for matrices with only one sample (#24) by @mdshw5 in #25

New Contributors

• @ucpete made their first contribution in #21

Full Changelog: v0.1.4...v0.1.4.4

v0.1.4.3

• Fixes a bug in the previous release (#23)

v0.1.4.2

• Adds support for writing gene-level effective lengths matrix (#22)

v0.1.4

• Write out salmon effective length matrices (#6)
• Fix a bug in handling negative strand transcripts during transcriptomics indexing (#15)
• Remove filtering logic for low count genes before DGE (#13)
• Support for new intricacies in pip wheel building process (#11)
• Add ERCC spike-in sequences to the default index builds (#8)

v0.1.3.1

This contains a hot fix for fastqp file type detection.