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@OmicsML

OmicsML

LLMs & Generative AI for omics data analysis (non-profit organization))

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  1. awesome-deep-learning-single-cell-papers awesome-deep-learning-single-cell-papers Public

    708 92

  2. dance dance Public

    DANCE: a deep learning library and benchmark platform for single-cell analysis

    Python 353 36

  3. awesome-foundation-model-single-cell-papers awesome-foundation-model-single-cell-papers Public

    180 22

  4. CellPLM CellPLM Public

    Official repo for CellPLM: Pre-training of Cell Language Model Beyond Single Cells.

    Jupyter Notebook 73 6

  5. SpatialCTD SpatialCTD Public

    A large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution

    Jupyter Notebook 38 1

  6. awesome-molecule-protein-pretrain-papers awesome-molecule-protein-pretrain-papers Public

    33 3

Repositories

Showing 10 of 17 repositories
  • dance Public

    DANCE: a deep learning library and benchmark platform for single-cell analysis

    OmicsML/dance’s past year of commit activity
    Python 353 BSD-2-Clause 36 26 (1 issue needs help) 8 Updated Dec 25, 2024
  • dance_auto_preprocess Public
    OmicsML/dance_auto_preprocess’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Dec 13, 2024
  • awesome-foundation-model-single-cell-papers Public
    OmicsML/awesome-foundation-model-single-cell-papers’s past year of commit activity
    180 MIT 22 0 0 Updated Nov 18, 2024
  • awesome-deep-learning-single-cell-papers Public
    OmicsML/awesome-deep-learning-single-cell-papers’s past year of commit activity
    708 Apache-2.0 92 5 0 Updated Sep 30, 2024
  • test.io Public

    test

    OmicsML/test.io’s past year of commit activity
    0 0 0 0 Updated Sep 22, 2024
  • awesome-agents-biology-papers Public
    OmicsML/awesome-agents-biology-papers’s past year of commit activity
    8 3 0 0 Updated Sep 19, 2024
  • SpatialCTD Public

    A large scale atlas coming with Graph Neural Network solution for spatial cell type deconvolution

    OmicsML/SpatialCTD’s past year of commit activity
    Jupyter Notebook 38 MIT 1 2 0 Updated Sep 15, 2024
  • scDiff Public

    scDiff: A General Single-Cell Analysis Framework via Conditional Diffusion Generative Models

    OmicsML/scDiff’s past year of commit activity
    Python 23 MIT 4 2 0 Updated Aug 13, 2024
  • focus Public
    OmicsML/focus’s past year of commit activity
    Python 3 0 1 0 Updated Aug 3, 2024
  • scLLMBench Public

    scLLMBench: A fexible framework for accelerating single-cell foundation model benchmarking

    OmicsML/scLLMBench’s past year of commit activity
    0 MIT 1 0 0 Updated Apr 8, 2024
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