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all to not water for writing (#431)
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* all to not water for writing

* Update test_rfe_tokenization.py

* Update test_rfe_tokenization.py
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IAlibay authored Jun 1, 2023
1 parent 8617017 commit 501aded
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Showing 2 changed files with 3 additions and 3 deletions.
4 changes: 2 additions & 2 deletions openfe/protocols/openmm_rfe/equil_rfe_settings.py
Original file line number Diff line number Diff line change
Expand Up @@ -470,10 +470,10 @@ class Config:
# reporter settings
output_filename = 'simulation.nc'
"""Path to the storage file for analysis. Default 'simulation.nc'."""
output_indices = 'all'
output_indices = 'not water'
"""
Selection string for which part of the system to write coordinates for.
Default 'all'.
Default 'not water'.
"""
checkpoint_interval = 250 * unit.timestep
"""
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2 changes: 1 addition & 1 deletion openfe/tests/protocols/test_rfe_tokenization.py
Original file line number Diff line number Diff line change
Expand Up @@ -39,7 +39,7 @@ def instance(self):

class TestRelativeHybridTopologyProtocol(GufeTokenizableTestsMixin):
cls = openmm_rfe.RelativeHybridTopologyProtocol
key = "RelativeHybridTopologyProtocol-c72eb29e68b291fa5906faa45e3ead89"
key = "RelativeHybridTopologyProtocol-45f44c31d23550c88408489a162d145e"
repr = f"<{key}>"

@pytest.fixture()
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