An R package that provides functions for undertaking epiphytotic modelling and simulation studies in R.
This package aims to be a collaborative project to provide a suite of functions for epidemiologists to build models from. The functions should be basic and easy to adapt to the various models. We hope this becomes a dependency for many more models. We welcome contributions additional branches to explore additional functionality and features.
This does not provide full epidemiological models. See the following R packages for flexible complete models:
not yet vetted
epiphytoolR is not on CRAN but is aimed for a release sometime in 2025.
You can install a stable version from the main branch with the following code
remotes::install_github("PaulMelloy/epiphytoolR")
Or you can install the development version from the development (dev) branch
with the following command in R
remotes::install_github("PaulMelloy/epiphytoolR", ref = "dev")
The dev branch will have newer bug fixes and more features,
see NEWS.md
Create an issue on this repo.
- Fork the repo and create a pull request.
- Request contribute access in the pull request.
This package provides common base level functions that can be used in modelling the spatial movement of splash and wind dispersed plant disease inoculum.
Estimating Daily Infection Values, AUDPC, ect.
Epidemiological models need clean consistent weather data, this package contains functions to provide clean interpolated data for models.
For more information see pkgdown website epiphytoolR