Pinned Loading

1. MLModules MLModules Public

   Here are modular ML portions that I have written for myself, but included jupyter notebook examples explaining them. Hopefully you find them useful!

   Jupyter Notebook

2. UsefulRosettaScripts UsefulRosettaScripts Public

   Here are some Rosetta based scripts that I have made that are general enough they may be useful for something within your project! Enjoy :)

   Python 1

3. openmm-scripts openmm-scripts Public

   Helpful python scripts written to be able to easily submit an MD trajectory submitted to either a GPU or CPU on a cluster or local pc.

   Python

4. Zach-Sisson-1/Host-Pathogen_Network_Analysis Zach-Sisson-1/Host-Pathogen_Network_Analysis Public

   Project in collaboration with Parisa Hosseinzadeh at the University of Oregon investigating the sub-network of interactions between pathogen and human proteins

   Jupyter Notebook 2

5. Deduper-PowersPope Deduper-PowersPope Public

   Tool to remove PCR duplicates

   HTML

6. Demultiplex Demultiplex Public

   Tool to Demultiplex and determine the level of index swapping and undetermined index-pairs, before and after quality filtering of index reads.

   Python 1 1