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PreibischLab

Preibisch Lab

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  1. BigStitcher BigStitcher Public

    ImgLib2/BDV implementation of Stitching for large datasets

    Java 73 16

  2. RS-FISH RS-FISH Public

    Tool for precise, interactive, fast and scalable FISH spot detection

    Java 49 14

  3. STIM STIM Public

    Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.

    Java 27 1

  4. multiview-reconstruction multiview-reconstruction Public

    Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

    Java 25 22

  5. multiview-simulation multiview-simulation Public

    Code for simulating a multi-view acquisition including attenuation, convolution, reduced sampling and poission noise

    Java 12 5

  6. dl-cell-counting dl-cell-counting Public

    Repo contains the implementation of the count-ception CNN (Tensorflow + Keras)

    Jupyter Notebook 11 4

Repositories

Showing 10 of 51 repositories
  • multiview-reconstruction Public

    Software for the reconstruction of multi-view microscopic acquisitions like Selective Plane Illumination Microscopy (SPIM) Data

    PreibischLab/multiview-reconstruction’s past year of commit activity
    Java 25 GPL-2.0 22 23 3 Updated Apr 11, 2025
  • BigStitcher Public

    ImgLib2/BDV implementation of Stitching for large datasets

    PreibischLab/BigStitcher’s past year of commit activity
    Java 73 GPL-2.0 16 83 1 Updated Apr 5, 2025
  • STIM Public

    Library for managing, storage, viewing, and working with spatial transcriptomics data using Imglib2, N5, BigDataViewer and Fiji.

    PreibischLab/STIM’s past year of commit activity
    Java 27 GPL-3.0 1 0 0 Updated Feb 22, 2025
  • RS-FISH-Spark Public

    Spark version of RS-FISH that can analyze large N5 volumes in a distributed fashion locally, on the cluster or in the cloud

    PreibischLab/RS-FISH-Spark’s past year of commit activity
    Java 7 GPL-2.0 0 1 1 Updated Feb 4, 2025
  • RS-FISH Public

    Tool for precise, interactive, fast and scalable FISH spot detection

    PreibischLab/RS-FISH’s past year of commit activity
    Java 49 GPL-2.0 14 10 0 Updated Feb 4, 2025
  • FunctionFit Public

    Extension of Saalfelds mpi-cbg package for function fits

    PreibischLab/FunctionFit’s past year of commit activity
    Java 2 BSD-3-Clause 1 0 0 Updated Feb 4, 2025
  • PreibischLab/Drosophila_Single_Cell_Brain_Circadian’s past year of commit activity
    Java 0 0 0 3 Updated Oct 3, 2024
  • FRC-QE Public

    Fourier Ring Correlation-based estimation of clearing quality

    PreibischLab/FRC-QE’s past year of commit activity
    HTML 3 2 0 0 Updated Jul 13, 2023
  • PINNA-2D Public

    PINNA 2D - Pixel-wIse NeuroN Annotation

    PreibischLab/PINNA-2D’s past year of commit activity
    Kotlin 0 0 0 1 Updated May 23, 2023
  • bigdataviewer-core-movie Public Forked from bigdataviewer/bigdataviewer-core

    ImgLib2-based viewer for registered SPIM stacks and more

    PreibischLab/bigdataviewer-core-movie’s past year of commit activity
    Java 3 BSD-2-Clause 38 0 0 Updated Nov 28, 2022