Qile0317
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Ibex Public
Forked from BorchLab/IbexUsing BCR and expression for sequence embedding
R Other UpdatedFeb 15, 2025 -
FastUtils Public
R package for readable, and fast utility functions.
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Trex Public
Forked from BorchLab/TrexUsing TCR and expression for sequence embedding
R Other UpdatedFeb 11, 2025 -
bHive Public
Forked from BorchLab/bHiveB-cell Hybrid Immune Variant Engine
R Other UpdatedFeb 10, 2025 -
scRepertoire Public
Forked from BorchLab/scRepertoireA toolkit for single-cell immune profiling
R Other UpdatedFeb 3, 2025 -
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Chainable.jl Public
Simplified function chaining in Julia.
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APackOfTheClones Public
Visualize clonal expansion via circle-packing. 'APackOfTheClones' extends 'scRepertoire' to produce a publication-ready visualization of clonal expansion at a single cell resolution, by representin…
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awesome-single-cell Public
Forked from seandavi/awesome-single-cellCommunity-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
MIT License UpdatedNov 10, 2024 -
APackOfTheClonesAppendix Public
Supplemental materials repository for the R package APackOfTheClones and its companion Journal Of Open Source Software paper.
Jupyter Notebook MIT License UpdatedNov 5, 2024 -
SimpleStatTools Public
A work in progress package to simplify statistical analysis
R Other UpdatedSep 15, 2023 -
SimplePdfMerger Public
A simple pdf merging desktop application
HTML MIT License UpdatedJul 10, 2023 -
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strobealign Public
Forked from ksahlin/strobealignAligns short reads using dynamic seed size with strobemers
C++ MIT License UpdatedMay 25, 2023 -
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namfinder Public
Forked from ksahlin/namfinderFinds Non-overlapping Approximate Matches (NAMs) between query and reference sequences using strobemers
C++ MIT License UpdatedMay 19, 2023 -
SCIPData Public
A data package for testing the APackOfTheClones package. Contains public 10X Genomics datasets.
R Other UpdatedMay 5, 2023 -
KmerGMA.jl Public
A seed-based homology searching tool
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Rosalind-in-R-and-Julia Public
A collection of Rosalind solutions
Julia MIT License UpdatedApr 8, 2023 -
NextGenSeqUtils.jl Public
Forked from MurrellGroup/NextGenSeqUtils.jlNextGenSeqUtils:
Julia Other UpdatedApr 1, 2023 -
Repository for analysis scripts, data, and general supplemental information for Utställningen Ungaforskare finals 2023
Jupyter Notebook GNU Lesser General Public License v2.1 UpdatedMar 21, 2023 -
SoFoCompBio22 Public
Updates and analysis scripts for my SoFo project.
Jupyter Notebook BSD 3-Clause "New" or "Revised" License UpdatedNov 17, 2022 -
Bacteria-Classifier-CNN Public
A resnet50 bacterial genus/strain classifier from the dibas dataset.
Jupyter Notebook Apache License 2.0 UpdatedNov 5, 2022 -
UCSD-biopy Public
scripts I developed for the UCSD bioinformatics course
Python MIT License UpdatedOct 12, 2022 -
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FreqTrie.jl Public
Implementation of a modified Trie datastructure where duplicate letters posses a "count" that increments when a character matches the current node.
Julia Apache License 2.0 UpdatedAug 15, 2022 -